Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2698 ATGGCTTCATTGGGGATAATTTTACTGGGTATTTTTTTGATGGTGTCATGTGTTAATGGCGATTTTGGAGGTTGGATCAACGCTCATGCCACTTTCTATGGAGGAAGTGATGCTTCTGGGACAATGGGAGGGGCTTGTGGATATGGGAATTTGTACAGCCAAGGGTATGGGACGAACACGGCGGCGCTGAGCACGGCGCTGTTTGACAATGGGCTGAGCTGCGGCGCTTGCTTTGAGCTGCGGTGTGTGAATGATCCGCAGTGGTGTATTCCGGGCACCATTGTTGTCACTGCCACTAACTTTTGCCCTCCCGGCGGCTGGTGCGACCCTCCGAACCACCATTTTGACCTGTCGCAGCCAATCTTTCAGCACATTGCCCAATATCGTGCCGGAATCGTCCCCGTCGCTTACCGGAGGGTGAGGTGTAGGAGAAGTGGAGGAATAAGGTTCACAATAAACGGACATTCATACTTTAATTTGGTGTTGATAACGAACGTGGGCGGCGCGGGAGATGTGCATGCGGTGGCGATAAAGGGTTCAAAAACCCGATGGCAACCAATGTCGAGAAATTGGGGCCAAAACTGGCAGTCGAATTCTTATCTCAACGGACAGAGCCTCTCCTTTCTGGTCACAGCCAGCGACGGACGACAAGTCCTCTCCTACAACGTCGCTCCTTCCGGCTGGTCCTTCGGACAAACCTACGTCGGGGCACAGTTTCGCTACTAA 726 52.62 MASLGIILLGIFLMVSCVNGDFGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFDNGLSCGACFELRCVNDPQWCIPGTIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYRAGIVPVAYRRVRCRRSGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSKTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSYNVAPSGWSFGQTYVGAQFRY 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44428667 44430375 - Lag0030085.1 Lac8g2698 618532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2698 241 FunFam Expansin 15 143 - -
Lac8g2698 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 147 IPR007112 -
Lac8g2698 241 SUPERFAMILY PHL pollen allergen 144 235 IPR036749 -
Lac8g2698 241 CDD DPBB_EXPA_N 24 142 - -
Lac8g2698 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 236 IPR007117 -
Lac8g2698 241 SUPERFAMILY Barwin-like endoglucanases 24 165 IPR036908 -
Lac8g2698 241 Gene3D - 14 143 IPR036908 -
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576(InterPro)
Lac8g2698 241 Pfam Lytic transglycolase 60 137 IPR009009 -
Lac8g2698 241 SMART dpbb_1 60 137 IPR007112 -
Lac8g2698 241 Gene3D - 147 239 IPR036749 -
Lac8g2698 241 FunFam Expansin 147 239 - -
Lac8g2698 241 PRINTS Expansin signature 122 135 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 222 238 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 158 179 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 94 104 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 82 93 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 105 122 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 55 69 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 146 158 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 PRINTS Expansin signature 193 214 IPR002963 GO:0009664(InterPro)
Lac8g2698 241 Pfam Expansin C-terminal domain 148 225 IPR007117 -
Lac8g2698 241 PANTHER EXPANSIN-A15 10 239 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2698 Lac-Chr8:44428667 Lac8g2843 Lac-Chr8:45632129 7.40E-103 dispersed
Lac10g0088 Lac-Chr10:679323 Lac8g2698 Lac-Chr8:44428667 8.30E-102 wgd
Lac13g0330 Lac-Chr13:2362861 Lac8g2698 Lac-Chr8:44428667 1.50E-111 wgd
Lac3g0609 Lac-Chr3:4734490 Lac8g2698 Lac-Chr8:44428667 1.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2698 K20628 - csv:101220358 470.7