Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2724 ATGGCTAAGAAAGACGACTCTGCAAGAGCTCCACTCCACCGCCCCACAATTACTCTCCCGCCTCGCCCTTCCATCGAGGCCTTTTTCGCCGGCGGACCCACTGGGGTTAGCCCTGGCCCTATGACTCTCGTCTCCAGTTTCTTCGCCGACGCTGCCGTTGACTCGCCCTCCTTCTCCCAGCTTCTCGCCGGAGCCATGGGCTCTCCCATGGCTATGGGCTTTCTCGGAACTGGCTCCACCCCCAATTATTACGCCAAGGATGAAGGCGCCTCCGAATTGGAATTTGGTCTCAAACAATCCAAGCCGCTCAATTTGGTCGTGGCTCGCTCTCCTTTGTTCTCGGTCCCGCCGGGGCTCAGCCCCTCTGGGTTGCTTAATTCGCCGGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCATCAGCAGGCATTGGCTCAGGTTACTGCTCAAGCGGCACTGGCACATTCTCATATGCATATGCAGCAAGCTGAATATCAACATTCTTCTGTACCAGCTCCTACGGAAACATTGACACGCGATCCATCATTTACTCTTGATGAAGCATCTCAACAGTCAATATTACCCTCCACATCAGACACAAAAAGTCTCATTGCAGAATCAGCAGAAGTCTCTCACTCTGATAGAAAATACCAACCTCCTCCTCCCCATGCCTCTGATAAACCTGCAGATGATGGCTATAACTGGCGTAAATATGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACACATTTAAATTGCCCCGTTAAAAAGAAGATCGAGCGCTCGCCTGACGGTCAAATTACCGAAATTATTTACAAAGGGCAGCACAACCATGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGCGAACCAACTGGGTGTACAAATTCTTTGATGAAGCCTGAAAGTGCATCCCAAAATCAAGCTGGAATTTTAAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACAAGCTGATACGGAGATAACAGACGACAGAGATGAAGATGAACCAAACCCCAAGAGGCAGAACATTGAGTCAGGGACATCTGCTGTTGCTTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGTGAGGTCGACCTGTTAGATGATGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTAGAGAGGTCTTCAACAGACTCGAAAGCTGTCGTAACTACGTACGAAGGCAAACATAACCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACAGCCAACAATACAGTGCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTTGGAAGTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 48.12 MAKKDDSARAPLHRPTITLPPRPSIEAFFAGGPTGVSPGPMTLVSSFFADAAVDSPSFSQLLAGAMGSPMAMGFLGTGSTPNYYAKDEGASELEFGLKQSKPLNLVVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALAHSHMHMQQAEYQHSSVPAPTETLTRDPSFTLDEASQQSILPSTSDTKSLIAESAEVSHSDRKYQPPPPHASDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPTGCTNSLMKPESASQNQAGILNKSSENVQLGSSDSEEQADTEITDDRDEDEPNPKRQNIESGTSAVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTANNTVPQIKPHKVVAQKHPLLKEMEFGSNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44682047 44686192 - Lag0030111.1 Lac8g2724 618558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2724 504 MobiDBLite consensus disorder prediction 281 369 - -
Lac8g2724 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 MobiDBLite consensus disorder prediction 1 26 - -
Lac8g2724 504 MobiDBLite consensus disorder prediction 159 234 - -
Lac8g2724 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 161 469 IPR044810 GO:0003700(InterPro)
Lac8g2724 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 SUPERFAMILY WRKY DNA-binding domain 228 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 MobiDBLite consensus disorder prediction 162 208 - -
Lac8g2724 504 FunFam WRKY transcription factor 219 290 - -
Lac8g2724 504 FunFam WRKY transcription factor 33 377 443 - -
Lac8g2724 504 MobiDBLite consensus disorder prediction 298 338 - -
Lac8g2724 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac8g2724 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g0962 Lac-Chr5:14557435 Lac8g2724 Lac-Chr8:44682047 5.30E-70 dispersed
Lac7g2888 Lac-Chr7:47981406 Lac8g2724 Lac-Chr8:44682047 2.20E-65 dispersed
Lac8g2724 Lac-Chr8:44682047 Lac10g3058 Lac-Chr10:45061822 2.30E-45 dispersed
Lac13g0351 Lac-Chr13:2517778 Lac8g2724 Lac-Chr8:44682047 5.80E-118 wgd
Lac8g2724 Lac-Chr8:44682047 Lac9g2348 Lac-Chr9:42749885 4.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24357 PF03106 WRKY 3.20E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2724 - - - 0.0