Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2728 ATGGAGGTGAGCATTTTTGTTAATGGAGAGATACGGGAGAATAACCATTCGATTGTGCAGACAAAAAACGAAAGCCCCACCACCGTCTCCCTCTGCATATCCTCTCCCCCTTTACCTTGCGTGATTATTCCTCAACTTCTTCTTCACAACTCAATACTCTCTTCCATTATTATTATTTCTCATGTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATCTCTCCCATGGTGCTTCTCTCCCCATGCCTTCTCTCCCCAGTCTCCCCTTCTCCTCTCCCATGTGGACCGAGCTTTGCCTGAGGCGGACCACCCCTCCTCTCAATGCCCACCACGACCCCGATGACAGCCCCATCACCACCACCGTCGAGTGCTACGCCTGCACCCAAGTCGGCGTCCCGGCCTTCCACTCCACCAGCTGCGACCACGCCCACCAGCAGCCCCAATGGGAGGCCTCCGCCGGCTCTTCCCTCGTCCCCATTCAGCCCACCAAGGCCTCCCCTCGCCGCCCCGCCCCGCACCATCCTTCCGGCCGCTTCGGCACCGTTCTCGACCCGAGAACCAAGCAGGTCCAGAGATGGAACCGGGCTCTGCTACTGGCCCGTGGAATGGCCCTCGCCGTCGACCCTCTCTACTTCTACGCGCTCTCCATCGGACGTGGTGGGTCGCCGTGCCTCTACATGGACGGCGGATTGGCCGCCGTCGTCACCGTCCTCCGCACCTGCCTCGATTTCGTGCACTTGTGGCACGTTTGGCTCCAATTCCGCCTCGCCTACGTGTCCAAGGAGAGCATGGTGATTGGCTGCGGCAAACTCGTGTGGGACGCACGTGCCATCGCCTCTCATTACGTTCGTTCCTTCAAAGGCTTCTGGTTCGATGCCTTTGTCATCCTCCCAGTTCCTCAGATTGTTTATTGGTTGGTTTTACCAAAACTAATCAGAGAAGAGAGAATCAAACTTATAATGACAGTAATCTTATTAATGTTCTTGTTCCAATTCCTCCCAAAAGTCTACCACTCCATTATTCTAATGAGAAGAATGCAGAAGGTCACTGGATACATCTTTGGCACCATTTGGTGGGGTTTTGGCCTCAATCTCATTGCCTATTTCATTGCCTCTCATGTTGCTGGGGGTTGCTGGTATGTTCTTGCAATACAGCGAGTCGCCTCTTGCATCCAGCAACATTGTGATAGAAACAAGTGCAACCTATCTCTGTCTTGCGCCGAGGAGGTCTGTTATCAGTTTCTCTCATCGGCTACGACGATTGGAAATTCGTGTGGTCGTAATTTGACTACTACATTTAGGAAGCCACTGTGCTTGGATGTTAATGGTCCATTCGCCTATGGCATCTACAAATGGGCTCTTCCAGTCATTTCTAGCAATTCAATTGCTGTCAAAATCCTCTATCCCATCTTTTGGGGCTTAATGACTCTCAGCACCTTTGGCAATGATCTCGAGCCCACGAGTAATTGGCTGGAAGTATGCTTCAGTATTTGCACAGTGCTCAGTGGACTGCTGCTTTTCACTCTTTTGATTGGTAATATACAGGTTCTTTTGCACGCCGTCATGGCAAGGAGGCGAAAAATGCAGCTGAGATGTCGAGATTTGGAGTGGTGGATGAGGAGACGACAATTGCCATCTCGCTTGAGACAACGAGTTCGACACTATGAACACCAGAGATGGGCAGCCATGGGCGGGGAAGATGAGATGGAGCTAATCAATGATTTGCCTGAAGGTCTTAGAAGAGACATTAAACGTCATCTTTGTGTTGATCTCATCAGAAAGGTACCTCTGTTCCAAAACCTGGATGAGCTTATACTCGACAACATCTGCGATCGAGTCAAGCCACTTGTATTCTCTAAGGATGAAAAGATCATCAGAGAAGGAGATCCTGTTCCGAGGATGTTATTCATAGTGTGCGGCCGTGTAAAACGTAGCCAAAGCCTGAGCAAGGGCATGACAGCAACAAGTTCGATTGAACCAGGAGGATTTCTCGGCGACGAGCTGCTATCGTGGTGTCTTCGGCGCCCATTTCTCGAGAGGCTTCCAGCTTCATCAGCTACATTTGTTTGCATCGAACCAACAGAAGCATTTGCCCTGAAAGCAGACCATCTGAAGTACATAACCGATCACTTCCGCTACAAATTCGCCAATGAGCGACTTAAGAGAACAGCAAGATACTACTCTTCTAACTGGAGAACATGGGCTGCTGTGAACATACAATTTGCTTGGCGTCGCTACCGAAAGAGGATGAGACGTCCAGTGATAGCTGTGGTGGAAAATGGAAGCAATGAACGTCGGCTTCTGCAGTATGCTGCAATGTTCATGTCATTCAGGCCACATGACCATCTTGAATAG 2367 50.23 MEVSIFVNGEIRENNHSIVQTKNESPTTVSLCISSPPLPCVIIPQLLLHNSILSSIIIISHVPSSSSSSSSSSSSSNLSHGASLPMPSLPSLPFSSPMWTELCLRRTTPPLNAHHDPDDSPITTTVECYACTQVGVPAFHSTSCDHAHQQPQWEASAGSSLVPIQPTKASPRRPAPHHPSGRFGTVLDPRTKQVQRWNRALLLARGMALAVDPLYFYALSIGRGGSPCLYMDGGLAAVVTVLRTCLDFVHLWHVWLQFRLAYVSKESMVIGCGKLVWDARAIASHYVRSFKGFWFDAFVILPVPQIVYWLVLPKLIREERIKLIMTVILLMFLFQFLPKVYHSIILMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCIQQHCDRNKCNLSLSCAEEVCYQFLSSATTIGNSCGRNLTTTFRKPLCLDVNGPFAYGIYKWALPVISSNSIAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVCFSICTVLSGLLLFTLLIGNIQVLLHAVMARRRKMQLRCRDLEWWMRRRQLPSRLRQRVRHYEHQRWAAMGGEDEMELINDLPEGLRRDIKRHLCVDLIRKVPLFQNLDELILDNICDRVKPLVFSKDEKIIREGDPVPRMLFIVCGRVKRSQSLSKGMTATSSIEPGGFLGDELLSWCLRRPFLERLPASSATFVCIEPTEAFALKADHLKYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRKRMRRPVIAVVENGSNERRLLQYAAMFMSFRPHDHLE 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44715561 44719798 - Lag0030115.1 Lac8g2728 618562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2728 788 Gene3D Jelly Rolls 599 717 IPR014710 -
Lac8g2728 788 SMART cnmp_10 601 726 IPR000595 -
Lac8g2728 788 Gene3D Helix hairpin bin 527 592 - -
Lac8g2728 788 CDD CAP_ED 601 708 IPR000595 -
Lac8g2728 788 Pfam Cyclic nucleotide-binding domain 621 710 IPR000595 -
Lac8g2728 788 ProSiteProfiles cAMP/cGMP binding motif profile. 601 680 IPR000595 -
Lac8g2728 788 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 177 755 - -
Lac8g2728 788 SUPERFAMILY Voltage-gated potassium channels 190 523 - -
Lac8g2728 788 MobiDBLite consensus disorder prediction 155 186 - -
Lac8g2728 788 SUPERFAMILY cAMP-binding domain-like 528 715 IPR018490 -
Lac8g2728 788 Gene3D - 233 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1656 Lac-Chr5:33616474 Lac8g2728 Lac-Chr8:44715561 9.50E-185 dispersed
Lac5g2756 Lac-Chr5:45967472 Lac8g2728 Lac-Chr8:44715561 8.60E-215 dispersed
Lac8g2728 Lac-Chr8:44715561 Lac9g2595 Lac-Chr9:44480023 6.40E-103 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2728 K05391 - csv:101203560 1300.03