Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2769 | ATGTTTGTATTGGATGATGATCAGCTTGGTTTGCTATTGGTTTTGCTATGGTATTTGATTTCCTCATCATCGAAGGAAAGAATCTGTGTTTTCAGAGGTGATCGCATTGGAATTTTGCATCCCAGTTGCTTCGAGGATAATCCCTTTGGATCCTCATTCTCATTAACTGTATTACTGAACAGAGGCTGCTTATTTTACAGATTGGTAGGAGTTGGCACAATGGGTGCTGTCTGCTGCTGCTTGAGTGTTGAGGATTTCGAAGACTATGTTAATCCTAATAGTTCAGTGTATAGGAATTGCACCTGTCTCAGTTGCTTCATTCAGAGCTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTACATTCTATCTCTTCATCAATTCAAGGGGCAACATCTATGAATACTACCGCATCAACAGATAACTCTTTGTCTGAAATGTACCGCTCACCTCCAAGGCCTTTGCCTTATGATGCTGATCCTAGATACATCCGATTGCAGCGGGATGGATTAATTTCTAGACGGGAGAAGGGGTCAAGCCATTTACATGAGGAATCGGAACCTTTAAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGGCTCGGCAGGAAAATGGAATGGATCTGCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCGTCTCTAAAGTTTCCTTCAACTAAATCTACCTCTGGAGTTGGGTATGCTTATACATCCTCTGAAGACGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA | 903 | 40.97 | MFVLDDDQLGLLLVLLWYLISSSSKERICVFRGDRIGILHPSCFEDNPFGSSFSLTVLLNRGCLFYRLVGVGTMGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSISSSIQGATSMNTTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTSGVGYAYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 300 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 44984670 | 44988754 | - | Lag0030156.1 | Lac8g2769 | 618603 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2769 | 300 | SMART | ring_2 | 250 | 290 | IPR001841 | - | |
| Lac8g2769 | 300 | MobiDBLite | consensus disorder prediction | 176 | 196 | - | - | |
| Lac8g2769 | 300 | FunFam | E3 ubiquitin-protein ligase At3g02290-like | 227 | 297 | - | - | |
| Lac8g2769 | 300 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 236 | 300 | IPR013083 | - | |
| Lac8g2769 | 300 | ProSiteProfiles | Zinc finger RING-type profile. | 250 | 290 | IPR001841 | - | |
| Lac8g2769 | 300 | Pfam | Ring finger domain | 249 | 290 | IPR001841 | - | |
| Lac8g2769 | 300 | MobiDBLite | consensus disorder prediction | 137 | 162 | - | - | |
| Lac8g2769 | 300 | MobiDBLite | consensus disorder prediction | 176 | 203 | - | - | |
| Lac8g2769 | 300 | CDD | RING-H2_AIRP1-like | 246 | 294 | - | - | |
| Lac8g2769 | 300 | SUPERFAMILY | RING/U-box | 244 | 296 | - | - | |
| Lac8g2769 | 300 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 74 | 296 | - | GO:0004842(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac8g2769 | Lac-Chr8:44984670 | Lac11g2071 | Lac-Chr11:36575171 | 1.60E-17 | transposed |
Pathway information