Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2791 ATGAGGAGAACTGAGGCTACTGCTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGCTATCTCCCAAAGGTGTAAACTATGAAGTCCAAGCCCTGATGGGTATAAAAGCTTCCCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGACTCTGTTGACCCATGTAGCTGGACTATGGTTACTTGCTCCCCTGAGAGCCTTGTCATTGGCCTAGGAACTCCAAGCCAGAACCTGTCTGGGACCCTTTCTTCAAGCATTGGGAATTTAACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATTACAGGCCCAATTCCCCCAGAGCTTGGAAGGCTCTCAAAGCTTCAAACACTTGATCTATCAAACAACTCCTTCACTGGGGGAATTCCTTCTTCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGCAATTCCAATGTCTTTAGCCAACATGACCCAGCTTGCTTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCCAGATTTCCCAGCAAAACATTCAACATTGTTGGAAACCCTCTGATCTGTGCAACCGGGTCTGAGGCCGGTTGCCACGGTACAACTCTGATGCCCATGTCCATGAATTTGAACACTACACAAACTGGTTTGCCTCCTGTGAGATTGAAGAGTCACAAAATGGCCCTTACATTTGGCTTGAGCCTATCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTTATATGGTGGAGAAGGCGAAGCAATCGGCCCACATTCTTCGATGTAAAAGACCGACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGGGAACTTCAGATAGCAACAAACAACTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCGGATGGAACAGTTGTAGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGTAGAGGCGAGATCCAGTTTCAGACTGAAGTTGAGATGATCAGCCTAGCTGTGCACCGTCATCTCCTCAGACTATACGGTTTTTGCAATACACCAACCGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTCGCCTCCCGTCTTAAAGGAAAACCGGTACTAGACTGGGGAACAAGAAAGAGAATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTCCATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAAGCTGCAAACATATTGCTCGACGACTACTGCGAGGCCGTCGTTGGAGATTTCGGGTTGGCAAAGCTTCTAGACCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACTGTTGGACATATAGCTCCTGAGTATCTCTCCACTGGACAGTCGTCCGAGAAAACAGACGTTTTCGGATTCGGAATCTTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTGGAGAAGAAGCTGGAAGTGCTAGTGGACAAGGATTTGAAAGGAAACTATGACAGAGTTGAGCTAGAGGAGATGGTTCAAGTGGCTCTGTTGTGCACACAATACCTACCAGGACACAGACCAAAGATGTCAGAAGTAGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAAAGAGTTGATACATCAAAGTGCAAACCCCATGATTTCTCTTCATCAGACAGATACTCTGATCTCACAGATGACTCTTCATTGTTGGTTCAAGCAATGGAGCTCTCTGGTCCAAGGTGA 1875 45.12 MRRTEATASCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSSSIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNSFTGGIPSSLGHLRSLQYLRLNNNSLSGAIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNTTQTGLPPVRLKSHKMALTFGLSLSCLCLIVLVFGLFIWWRRRSNRPTFFDVKDRQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEVLVDKDLKGNYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDTSKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45141079 45144439 - Lag0030178.1 Lac8g2791 618625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2791 624 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524(InterPro)
Lac8g2791 624 SMART serkin_6 304 573 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2791 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2791 624 Pfam Leucine rich repeat 123 182 IPR001611 GO:0005515(InterPro)
Lac8g2791 624 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Lac8g2791 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 624 - -
Lac8g2791 624 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2791 624 SUPERFAMILY L domain-like 33 196 - -
Lac8g2791 624 FunFam Somatic embryogenesis receptor-like kinase 1 381 593 - -
Lac8g2791 624 ProSiteProfiles Protein kinase domain profile. 304 559 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2791 624 SUPERFAMILY Protein kinase-like (PK-like) 280 574 IPR011009 -
Lac8g2791 624 FunFam Somatic embryogenesis receptor kinase 1 273 380 - -
Lac8g2791 624 FunFam Putative LRR receptor-like serine/threonine-protein kinase 31 213 - -
Lac8g2791 624 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Lac8g2791 624 Gene3D Phosphorylase Kinase; domain 1 273 380 - -
Lac8g2791 624 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Lac8g2791 624 Gene3D Transferase(Phosphotransferase) domain 1 381 593 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac3g0246 Lac-Chr3:1750316 Lac8g2791 Lac-Chr8:45141079 3.30E-185 dispersed
Lac6g1302 Lac-Chr6:13140525 Lac8g2791 Lac-Chr8:45141079 7.60E-192 dispersed
Lac8g2136 Lac-Chr8:39798820 Lac8g2791 Lac-Chr8:45141079 4.10E-222 dispersed
Lac8g2791 Lac-Chr8:45141079 Lac9g0054 Lac-Chr9:814507 7.60E-107 dispersed
Lac8g2791 Lac-Chr8:45141079 Lac13g0429 Lac-Chr13:3016255 3.60E-234 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86404 PF00069 Pkinase 8.20E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2791 - - - 0.0