Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2805 | ATGGCTTCTTCACCTTCTCCAAGTACTTCTCCTCCTGAAAATCCGTCAGATTCCACAGCTTTTTCACCTCCTTCTCCTTCTCCTCCTGCGGAGTCTGCATTATCTCCCTCATCCCCTACATCTTCTGTGCCTAATCAGACCGGTGAACCTCCTTCATCACCTTCTACTCCTTCAGCTCCACCTCCTCAATCACCACCAACTGTTCCTGATTCTCCACCTCCTTCTCCTACATTGTCTCCTCCTCCTGTGACAGCATCCCCACCTCCTTCTCCTGCTGGTTCCCCACCTCCGCCTCTACAATCGTCGCCATCGCCGCCGCCTCCTTCACCATCTTCCTCCCCACCACCACCTCCAACATCGACCTCTCCACCACCACCTTCAACATCACCACCACCACCTTCCTCTGATTCACCACCTCCTCCAGACCCATCCACTGCCTCTCCTCCTCCTGAAGCTTCACCTCCCCCTCCTGATTCATTGCCGCCGCCACCACCAGCAGGTGGTTCTCCACCTCCTCAATCCAATCCTAGACCTCCATTTTCAACTCACTCTCCCCCTCCCCCTGATGTAATTTCGCCTTCTCCACCTCCACCAACTAAAGTCCCGACACCGCCTTCACCAACAGGAGAATCACCTAAAGTATCTCCCCCGTCCCCCAAGGTTTCTCCTCCTCCTTCTGATTCTCAATCTCCACCTTCAGTTGATGCCCCTCCACCAAGAACTACAGTACCATCACCTCCTCCTTCAGTCCCTTCATCATCTGCTCCTCCTCCAGTTACTGTTCCTGGTCCTCCATCTAATTCATCTGGTGCGAGTCCTACTATCCCTCCAACTTCTGTTACACCTGAACGACCAATTCCAACAATCAATGGTACCAATGTTACAGCAAATGACTCAATCAGAGGTCGGGGTTTCAGCACTGGAACATCTGTGGCAGTTGGCAGCGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTATGTGGTTTGTTCAGAAACGGAAGAGACGGAAGAAGAATATCCCTTACACAATGCCCTCTCCTTTTTCCTCCCAAAACTCAGATTCCTTTTTCCTAAGGCCCAATTCTTCAGCTCCCGTGGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCAGCATCAGAAGGTGGAGTAGGTAATTCAAGATCATTTCCTTATGAAGAGCTGCACCAGGCAACAAGTGGATTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTACAAAGGCACCCTTTCAGATGGAAGAGACGTAGCCGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTCGGTTACTGTATCTCTGATTACCAAAGATTGCTTGTGTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGGTTCAAACAGGCCAGTTCTGGCTTGGGCTACACGTGTTCGAATTGCTGCTGGTGCAGCCCGTGGAATTGCCTACCTACATGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCATCTAACATTCTGCTCGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCATTGGATTCACATACACATGTAACAACTCGTGTAATGGGAACGTTTGGATACATGGCTCCAGAATACGCAACGAGTGGGAAATTGACGGATAAATCTGATGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTAATTTCTGGTCGCAAGCCTGTAGATTCTTCTCAGCCTCTAGGGGATGAGAGTTTAGTTGAATGGGCTCGACCATTGCTTGCACAAGCTATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATATCGACAGAGAAATGTTTCGGATGATCGAAGCAGCCGCCGCTTGCGTTCGTCATTCAGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAAAGTGGAGTATTTGATTCAGCTGAACATTCTGCTCAGATCAGAATGTTTCAAAGAATGGCTTTTGGCAGTCAGGATTACAGTTACGGTTATTCCGATCGAGATCGGGATCGAAGTCGAAGTTATAGTCAAAGTCAGAGTAGCTGGAGTAGAGAATCCAGGGATCAAAGTCCCTCGGCGCCTATTAATCGATCCCGGCAATGGAACATCTGA | 2292 | 47.99 | MASSPSPSTSPPENPSDSTAFSPPSPSPPAESALSPSSPTSSVPNQTGEPPSSPSTPSAPPPQSPPTVPDSPPPSPTLSPPPVTASPPPSPAGSPPPPLQSSPSPPPPSPSSSPPPPPTSTSPPPPSTSPPPPSSDSPPPPDPSTASPPPEASPPPPDSLPPPPPAGGSPPPQSNPRPPFSTHSPPPPDVISPSPPPPTKVPTPPSPTGESPKVSPPSPKVSPPPSDSQSPPSVDAPPPRTTVPSPPPSVPSSSAPPPVTVPGPPSNSSGASPTIPPTSVTPERPIPTINGTNVTANDSIRGRGFSTGTSVAVGSVVGVLVLSLVIMAMWFVQKRKRRKKNIPYTMPSPFSSQNSDSFFLRPNSSAPVVGSRTDSDFKYSASEGGVGNSRSFPYEELHQATSGFSSNNLLGEGGFGCVYKGTLSDGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGSNRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELISGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYIDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEHSAQIRMFQRMAFGSQDYSYGYSDRDRDRSRSYSQSQSSWSRESRDQSPSAPINRSRQWNI | 763 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 45266396 | 45272991 | - | Lag0030192.1 | Lac8g2805 | 618639 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 8 | 33 | - | - | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 1 | 300 | - | - | |
Lac8g2805 | 763 | Gene3D | Phosphorylase Kinase; domain 1 | 376 | 479 | - | - | |
Lac8g2805 | 763 | SUPERFAMILY | Protein kinase-like (PK-like) | 381 | 677 | IPR011009 | - | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 735 | 763 | - | - | |
Lac8g2805 | 763 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 290 | 713 | IPR047117 | - | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 723 | 763 | - | - | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 284 | 300 | - | - | |
Lac8g2805 | 763 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 377 | 479 | - | - | |
Lac8g2805 | 763 | ProSiteProfiles | Protein kinase domain profile. | 404 | 665 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g2805 | 763 | Gene3D | Transferase(Phosphotransferase) domain 1 | 480 | 692 | - | - | |
Lac8g2805 | 763 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 524 | 536 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 50 | 264 | - | - | |
Lac8g2805 | 763 | ProSitePatterns | Protein kinases ATP-binding region signature. | 410 | 432 | IPR017441 | GO:0005524(InterPro) | |
Lac8g2805 | 763 | SMART | serkin_6 | 404 | 660 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac8g2805 | 763 | FunFam | proline-rich receptor-like protein kinase PERK8 | 480 | 692 | - | - | |
Lac8g2805 | 763 | MobiDBLite | consensus disorder prediction | 34 | 49 | - | - | |
Lac8g2805 | 763 | Pfam | Protein tyrosine and serine/threonine kinase | 407 | 677 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac8g2805 | 763 | CDD | STKc_IRAK | 410 | 680 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac13g0200 | Lac-Chr13:1385928 | Lac8g2805 | Lac-Chr8:45266396 | 1.50E-141 | dispersed | |
Lac13g0438 | Lac-Chr13:3095235 | Lac8g2805 | Lac-Chr8:45266396 | 2.30E-147 | dispersed | |
Lac5g2874 | Lac-Chr5:46972873 | Lac8g2805 | Lac-Chr8:45266396 | 2.90E-74 | dispersed | |
Lac8g2805 | Lac-Chr8:45266396 | Lac9g1665 | Lac-Chr9:36012322 | 4.60E-122 | dispersed | |
Lac9g2597 | Lac-Chr9:44494276 | Lac8g2805 | Lac-Chr8:45266396 | 9.50E-66 | dispersed | |
Lac8g2805 | Lac-Chr8:45266396 | Lac6g2998 | Lac-Chr6:47585561 | 1.20E-130 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86405 | PF07714 | PK_Tyr_Ser-Thr | 1.90E-45 | CL0016 | Lac | PK |
Pathway information
