Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2839 ATGCTGACATTTTTGAACATGAAAAGAGTATTGGGTGAGTTCGTCTTGTTCGTCTTGTTCGTTGTGGCTCCAGCGTTTGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGCCTGATTGTGTTCAAGGCCGACATTGAAGATCCTCAAGGGAAGCTCGCCTCGTGGAGTGAAGATGATGATAGCCCCTGTAATTGGGTTGGTATAAAATGCAACCCCAGATCCAATAGAGTCGTTGAGCTCGATCTTGATGGGTTCTCTCTCAATGGCAGGCTCGGCCGTGGCCTTCTTCAGCTGCAGTTTCTTCGTAAACTTTCGCTTTCGAACAACAATCTTACTGGAAATTTGAGTCCCAATAATGCTCGCTTTGAGAATCTTCGAGTGGTCGATTTAAGCGGCAACAGTTTTTCTGGGATGGTTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTACTATCTTTGGCTAAGAACAAACTTTCTGGGAGAATCCCTGAAAGTTTGGGTTCTTGTACTAGTCTTGCTGCTCTTAATTTATCTTCTAATCAGTTTTCAGGTTCACTGCCTTCTGGGATTTGGTCCTTGACTGGGCTTCGATCTTTGGATTTGTCTGATAATGTTTTGGAAGGTGAAATTCCACAGGAGGTGAAGGGTATGAATAATTTGAGAGCTGTTAATTTGGGGAAGAATCGGTTTTCTGGGCTGATCCCAGATGGGATTGGGAGTTGTTTGCTCTTGAGGTCTGTTGATCTCAGTGAGAATTCTTTCTCCGGCGATGTTCCGGCGACAATGCAGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGAAGGAACTTATTTGAAGGGAAGGTTCCTGAATGGATTGGTGAAATGGAAGGCCTTGAAATCTTGGACCTTTCTGGGAATAGATTTTCTGGTCAGGTTCCAAGTTCATTTGGGAATCTTCAGAATCTGAAGGTTTTGAATCTTTCTGAAAATGATTTAACTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAGAACCTTTCAACCATGGATCTTGGTCACAGTTCTCTCACCGGTGTTCTTCCGGCGTGGATTCTCAAGTTGGGTTCTCAAAATGTATTGCCTTCTGATGTCAAAAGAAGCTCTCTTTCTACAACAGCGGGAAAAGCTCTTGTTAATCTTCAAGTGTTAGATTTGTCTCACAATGCATTTTCAGGTGAAATTTCACCTGAGATTGGGATATTAAGCAACTTGCAGGTGTTGAACCTGTGCAAGAACTCATTTGTTGGGGCTATTCCAGAGAGTATTGGAGGCCTGAAGGCCTTGGTTCTACTTGACTTGAGTGAGAACCAGTTGAATGGGAGCATTCCTGAAGCATTCGGTGGAGATGTGTCGTTGAAAGAATTGAGACTGGAGAAGAACTTGCTGGAGGGTGAAGTTCCAAATTCAATAGGGAACTGTTCTTCACTTGTAACTTTGGACATATCAGAAAACAGATTAACTGGCTCCATACCAGCAGCATTGTCTCAACTGACTAGTCTTCAAATTGTGGACTTTTCAACAAACAATCTCAGTGGTGCACTGCCTAAACAGTTGGCCAATCTTCCCAACCTTCTTGTGTTTAACATTTCTCACAACAATGTGCAAGGTGAACTGCCTGCAGGTGGCTTTTTCAATACAATCTCCCCTTCCTCTGTTGCTGGAAATCCATCTCTTTGTGGTTCTATTGTCAAGAAGTCTTGTCCTGGTGTCCTTCCAAAACCTATTGTTCTCAATCCCAACTCATCCTCTGACTCTGGTTCTCCTTCATTACCTTCAACTCTTGGTCACAAAAAGATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCTGCTGTTATCCTCGTCGGTGTAGTTGCGATCACCGTCCTTAACTTCCATGTTCGGTCATCTGCAAATCGTCCTGAAGCAGCCATCACGTTTTCTGGAGGGGATGATTTCAGCCACTCCCCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGAGCCTGACTTCAGTACCGGTGCACATGCCCTTCTTAACAAGGATTGCGAGCTTGGCCGTGGTGGATTTGGAGCAGTTTACCAGACTGTTCTTCGTGATGGGCATCCAGTTGCAATAAAAAAGCTCACTGTTTCAAGTCTAGTCAAATCTCAAGAAGACTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGGTTAGGCACCAAAATCTTGTTGCTCTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGAGGAAACATCCTCTCATGGAATGAAAGGTTCAATATAATCCTCGGAACGGCGAAAAGCTTGGCACATTTGCACCAAATGAACATCATCCACTACAATATAAAGTCAAGCAATGTCCTGATTGATAGTTCGGGCGAACCTAAAGTCGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTTGATCGGTACGTGTTGAGCAGCAAGATACAAAGTGCACTCGGCTATATGGCGCCTGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTAGTTCTTGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTGGTGGTACTCTGCGACATGGTTCGACGAGCGCTGGAAGAAGGTCGGGTGGAGGAATGCATTGATGGGAGGCTTCAGGGGAATTTTCCCTCCGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGACCTGATATGGCAGAGGTTGTTAATATATTAGAGCTTATCAGATGTCCATCAGAAGGCCAAGAAGAATTGGGATAA 2922 44.52 MLTFLNMKRVLGEFVLFVLFVVAPAFVRSLNPPLNDDVLGLIVFKADIEDPQGKLASWSEDDDSPCNWVGIKCNPRSNRVVELDLDGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNARFENLRVVDLSGNSFSGMVPDDFFRQCGSLRVLSLAKNKLSGRIPESLGSCTSLAALNLSSNQFSGSLPSGIWSLTGLRSLDLSDNVLEGEIPQEVKGMNNLRAVNLGKNRFSGLIPDGIGSCLLLRSVDLSENSFSGDVPATMQKLSLCSTLNLRRNLFEGKVPEWIGEMEGLEILDLSGNRFSGQVPSSFGNLQNLKVLNLSENDLTGSLAESIVPSQNLSTMDLGHSSLTGVLPAWILKLGSQNVLPSDVKRSSLSTTAGKALVNLQVLDLSHNAFSGEISPEIGILSNLQVLNLCKNSFVGAIPESIGGLKALVLLDLSENQLNGSIPEAFGGDVSLKELRLEKNLLEGEVPNSIGNCSSLVTLDISENRLTGSIPAALSQLTSLQIVDFSTNNLSGALPKQLANLPNLLVFNISHNNVQGELPAGGFFNTISPSSVAGNPSLCGSIVKKSCPGVLPKPIVLNPNSSSDSGSPSLPSTLGHKKIILSISALIAIGAAAVILVGVVAITVLNFHVRSSANRPEAAITFSGGDDFSHSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRRALEEGRVEECIDGRLQGNFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 973
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45589580 45592678 + Lag0030226.1 Lac8g2839 618673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2839 973 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Lac8g2839 973 Gene3D Phosphorylase Kinase; domain 1 683 766 - -
Lac8g2839 973 PANTHER OS05G0588300 PROTEIN 386 479 IPR050994 -
Lac8g2839 973 ProSiteProfiles Protein kinase domain profile. 690 962 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2839 973 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine Rich Repeat 104 120 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine Rich Repeat 224 246 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine Rich Repeat 391 411 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Gene3D Ribonuclease Inhibitor 35 312 IPR032675 -
Lac8g2839 973 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Lac8g2839 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 315 583 - -
Lac8g2839 973 Gene3D Ribonuclease Inhibitor 313 583 IPR032675 -
Lac8g2839 973 SUPERFAMILY L domain-like 224 367 - -
Lac8g2839 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 684 766 - -
Lac8g2839 973 SUPERFAMILY Protein kinase-like (PK-like) 693 963 IPR011009 -
Lac8g2839 973 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524(InterPro)
Lac8g2839 973 SMART LRR_typ_2 318 341 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 150 174 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 437 460 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 198 221 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 509 532 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 222 246 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 125 149 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 294 317 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 533 557 IPR003591 -
Lac8g2839 973 SMART LRR_typ_2 389 413 IPR003591 -
Lac8g2839 973 CDD STKc_IRAK 696 962 - -
Lac8g2839 973 Pfam Protein tyrosine and serine/threonine kinase 692 958 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2839 973 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 35 314 - -
Lac8g2839 973 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 767 968 - -
Lac8g2839 973 Pfam Leucine rich repeat 487 545 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine rich repeat 414 474 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine rich repeat 296 354 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 Pfam Leucine rich repeat 127 187 IPR001611 GO:0005515(InterPro)
Lac8g2839 973 SUPERFAMILY L domain-like 125 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3307 Lac-Chr10:46886267 Lac8g2839 Lac-Chr8:45589580 4.20E-181 dispersed
Lac8g2839 Lac-Chr8:45589580 Lac10g0377 Lac-Chr10:2941527 1.90E-51 dispersed
Lac5g0531 Lac-Chr5:6006762 Lac8g2839 Lac-Chr8:45589580 7.00E-82 transposed
Lac7g1197 Lac-Chr7:11096345 Lac8g2839 Lac-Chr8:45589580 3.70E-26 transposed
Lac7g1323 Lac-Chr7:12876229 Lac8g2839 Lac-Chr8:45589580 4.40E-47 transposed
Lac7g1382 Lac-Chr7:13681838 Lac8g2839 Lac-Chr8:45589580 6.00E-43 transposed
Lac13g1247 Lac-Chr13:11248380 Lac8g2839 Lac-Chr8:45589580 1.20E-193 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86406 PF07714 PK_Tyr_Ser-Thr 5.80E-41 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2839 - - - 0.0