Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2843 ATGCCGATCTCATCCATCTCTTCTCTCTCAATTTTCCTCCTAATTTTCCTCCCTGCAATCTCGGCCGACTACGGCGGAATGCAGTCCGGCCACGCCACGTTCTACGGCGGCGGCGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACGGCCAAGGATACGGGACGAACACGGCGGCCTTGAGTACGGCTCTCTTCAACAATGGCCTGAGCTGTGGGTCTTGTTATGAGATTACTTGCAGCAGTGATCCCAAGTGGTGTCTTCCTGGGAAAATCATCGTCACTGCCACTAATTTTTGCCCGCCCAACTTTGCTCTCTCCAACGACAATGGCGGCTGGTGCAACCCGCCGCTGCAGCACTTTGACTTGGCTGAGCCTGCCTTTCTCCAAATCGCTCAGTACCGTGCCGGCATCGTCCCCGTCTCCTTCCGACGAGTGCCGTGCGTGAAGAAGGGAGGAATAAGGTTCACGATCAACGGCCATTCATACTTCAACTTGGTGCTCATCACCAACGTCGGCGGCGCCGGCGACGTCCACTCGGTCTCGATCAAAGGATCCAAAACCGGATGGCAAGCAATGTCCAGAAATTGGGGACAGAACTGGCAGAGCAACAATTACATGAACGGACAGAGCCTCTCTTTCCAAGTCACCACCAGCGACGGCCGCACCGTCACCAGCTACGACGCCGCTCCGGCCAACTGGCAGTTCGGCCAGACCTTCGAGGGAGGCCAGTTCTGA 750 56.8 MPISSISSLSIFLLIFLPAISADYGGMQSGHATFYGGGDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLSCGSCYEITCSSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYMNGQSLSFQVTTSDGRTVTSYDAAPANWQFGQTFEGGQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45632129 45632964 + Lag0030230.1 Lac8g2843 618677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2843 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Lac8g2843 249 PANTHER EXPANSIN-A15 9 249 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Lac8g2843 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Lac8g2843 249 SMART dpbb_1 62 147 IPR007112 -
Lac8g2843 249 CDD DPBB_EXPA_N 28 152 - -
Lac8g2843 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Lac8g2843 249 FunFam Expansin 18 153 - -
Lac8g2843 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Lac8g2843 249 FunFam Expansin 157 249 - -
Lac8g2843 249 Gene3D - 156 249 IPR036749 -
Lac8g2843 249 Gene3D - 18 152 IPR036908 -
Lac8g2843 249 SUPERFAMILY Barwin-like endoglucanases 13 175 IPR036908 -
Lac8g2843 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Lac8g2843 249 Pfam Lytic transglycolase 62 147 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac13g0330 Lac-Chr13:2362861 Lac8g2843 Lac-Chr8:45632129 2.60E-111 dispersed
Lac6g0524 Lac-Chr6:4362739 Lac8g2843 Lac-Chr8:45632129 1.30E-92 dispersed
Lac6g1639 Lac-Chr6:23683462 Lac8g2843 Lac-Chr8:45632129 3.50E-108 dispersed
Lac8g2527 Lac-Chr8:43068512 Lac8g2843 Lac-Chr8:45632129 3.50E-98 dispersed
Lac8g2698 Lac-Chr8:44428667 Lac8g2843 Lac-Chr8:45632129 7.40E-103 dispersed
Lac8g2843 Lac-Chr8:45632129 Lac9g2465 Lac-Chr9:43539314 8.80E-99 dispersed
Lac13g1239 Lac-Chr13:11115619 Lac8g2843 Lac-Chr8:45632129 1.10E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2843 - - - 0.0