Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2852 ATGTCAAGAGAAAGGGAATTGTCGGAGGTGGAGGAGATAGGGAAGAAGATAAAGAGGGAAGTTGAAGGGTTGTATCCTAATTTGATGGGAAGAAGGCACATTTTGAGTCCAGCAGCTGGGACATTGAATACAATAACTCCATGTGCAGCTTGTAAACTTCTAAGAAGAAGGTGTGCCCAAGAATGTCCATTTTCTCCTTACTTCTCTCCACATGAACCCCACAAATTTGCTTCTGTTCACAAGGTTTTTGGTGCCAGCAACGTTGCTAAGATGCTCATGGAGGTACCGGAAAGCCAAAGAGCCGACGCGGCAAACAGCCTAGTTTATGAAGCCAATCTGAGGCTGAGAGATCCAGTCTACGGTTGCATGGGCGCCATTTCAGCTCTTCAACACCAACTTCAAACTTTACAAGCTGAGCTCAATGCTATTAGAACTGAGATTTTGAAGTACAAATATAGAGAAGCCATAATTCCTTCTACTTCTTCTTCCTCCTCTTCCCACATCGCTTTGATTTCGGCAGCCGGTGTCGTCGTTTCCACCACCGCAACGCCACCCGCAGCCCCGCCGACTCCGCCACATTCCCAGCCACCTCCGCTCTCTCTTCCGCCGCCTCTTCCTCCGTCTTCGTCTTCCATCTATTCCACACCCATCAGCAGTACTACTGCCCCTGAATTTAACCCCATCTCAACCGAACATATTTCCTACTTCGGATGA 714 48.18 MSRERELSEVEEIGKKIKREVEGLYPNLMGRRHILSPAAGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQAELNAIRTEILKYKYREAIIPSTSSSSSSHIALISAAGVVVSTTATPPAAPPTPPHSQPPPLSLPPPLPPSSSSIYSTPISSTTAPEFNPISTEHISYFG 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45705239 45706795 + Lag0030239.1 Lac8g2852 618686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2852 237 MobiDBLite consensus disorder prediction 181 225 - -
Lac8g2852 237 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 45 166 - -
Lac8g2852 237 Coils Coil 126 153 - -
Lac8g2852 237 Pfam Lateral organ boundaries (LOB) domain 47 143 IPR004883 -
Lac8g2852 237 MobiDBLite consensus disorder prediction 184 210 - -
Lac8g2852 237 MobiDBLite consensus disorder prediction 211 225 - -
Lac8g2852 237 ProSiteProfiles LOB domain profile. 46 147 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2852 Lac-Chr8:45705239 Lac9g2273 Lac-Chr9:42086121 2.00E-39 dispersed
Lac13g1221 Lac-Chr13:10860305 Lac8g2852 Lac-Chr8:45705239 4.60E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24362 PF03195 LOB 1.10E-40 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2852 - - - 0.0