Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2856 ATGGCTCGAGCTTTGATTTTGACTTTGGCTTTGTCTGTGCTCTTTTTGGGCAATGCCTCAGCTCAACTTTCTACTAGTTTTTACTCTTCTTCTTGTCCAAACTTGTTGTCCACTGTCAAATCCTCTGTTCGGTCTGCTGTCTCGAGTGAGGCTCGCATGGGGGCTTCCCTTCTTCGCTTGTTTTTTCATGACTGTTTTGTCAATGGATGTGACGGGTCGATTTTGTTGGACGACACGTCGAGCTTCACTGGAGAGAAAAATGCAAACCCCAACCGAAACTCCGCTAGAGGCTTCGATGTTATTGACAATATCAAAACCGCGGTTGAAAAGGCTTGTCCTGGCGTTGTTTCTTGTGCTGATATTCTTGCCATTGCTGCTCGTGACTCTGTTGTTCTTCTAGGAGGGCCGAGTTGGAATGTGAAGTTGGGAAGAAGAGATGCCACAACCGCTAGTCAATCCCAAGCCAACAGCGACATCCCCGCTCCAACTTCAACCCTAAGCCAACTCACCTCTAGATTCAGCTCCCTCGGACTCTCCAACACAGACTTGGTCGCTCTCTCAGGCGGACATACTATCGGACAAGCGAGGTGCACAACATTCAGAGGTAGAATATACAGCAACACCACAAACATAGACAGCTCATTTGCAACAACAAGGCAAGGGAATTGCCCCAGCACCTCTGGCTCCGGCGACAACAATTTGGCTCCTCTTGATTTGCAAACTCCAAATGGTTTCGACAACAACTACTTCAAAAACCTTCTTCAAAACAAGGGTTTGCTCCAGTCCGATCAAGTTCTCTTCAATGGCGGATCTACAGACTCCACTGTCCGAAATTACGCCAATGCCCCTGCCCGTTTCTTCTCTGATTTTGCCGCCGCCATGGTCAAGATGAGCGATATCAGTCCTCTCACTGGCTCCAATGGCGAAATTAGGAAGAACTGCAGAAGGGTTAATTAA 957 47.96 MARALILTLALSVLFLGNASAQLSTSFYSSSCPNLLSTVKSSVRSAVSSEARMGASLLRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSARGFDVIDNIKTAVEKACPGVVSCADILAIAARDSVVLLGGPSWNVKLGRRDATTASQSQANSDIPAPTSTLSQLTSRFSSLGLSNTDLVALSGGHTIGQARCTTFRGRIYSNTTNIDSSFATTRQGNCPSTSGSGDNNLAPLDLQTPNGFDNNYFKNLLQNKGLLQSDQVLFNGGSTDSTVRNYANAPARFFSDFAAAMVKMSDISPLTGSNGEIRKNCRRVN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45719962 45721441 - Lag0030243.1 Lac8g2856 618690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2856 318 Gene3D Peroxidase, domain 2 160 297 - -
Lac8g2856 318 ProSiteProfiles Plant heme peroxidase family profile. 22 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 FunFam Peroxidase 160 297 - -
Lac8g2856 318 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 CDD secretory_peroxidase 22 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac8g2856 318 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 PANTHER PEROXIDASE 72-RELATED 13 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 Pfam Peroxidase 39 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 FunFam Peroxidase 26 171 - -
Lac8g2856 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Lac8g2856 318 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Lac8g2856 318 SUPERFAMILY Heme-dependent peroxidases 22 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2856 318 Gene3D - 27 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0764 Lac-Chr12:7993796 Lac8g2856 Lac-Chr8:45719962 1.40E-96 dispersed
Lac13g0426 Lac-Chr13:2996718 Lac8g2856 Lac-Chr8:45719962 1.90E-75 dispersed
Lac13g1829 Lac-Chr13:22207321 Lac8g2856 Lac-Chr8:45719962 1.50E-103 dispersed
Lac1g2959 Lac-Chr1:50399663 Lac8g2856 Lac-Chr8:45719962 7.10E-88 dispersed
Lac5g2087 Lac-Chr5:39510460 Lac8g2856 Lac-Chr8:45719962 7.80E-90 dispersed
Lac7g2901 Lac-Chr7:48102298 Lac8g2856 Lac-Chr8:45719962 1.20E-98 dispersed
Lac8g2856 Lac-Chr8:45719962 Lac9g2340 Lac-Chr9:42696952 6.20E-105 dispersed
Lac8g2854 Lac-Chr8:45713778 Lac8g2856 Lac-Chr8:45719962 8.80E-56 proximal
Lac8g2855 Lac-Chr8:45714609 Lac8g2856 Lac-Chr8:45719962 1.30E-18 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2856 K00430 - csv:101218447 545.814