Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2871 ATGAGTCTCGGTGATCAATATTCTGATACAATTTCTTTATTTACCAATTCAATTAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGTTAATTCTTGTAACGATGGAGGCAAGCCAGTTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCCTTAAATTCACATTGCAATTACAGAGGTGTGAGGCAGAGGACATGGGGCAAATGGGTTGCAGAGATTCGTGAACCTAACAGAGGGAGTAGGCTGTGGCTTGGTACCTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGCCAGAGTGCTCGTTTGAACCTTCCTAACATTACAAACAACGGGCAGCTAAAAGGGATTCTTTTGGAGGATTATTTGGGGCTCCGTAACTCGGATTCTTCAACTGCTTCTTCAACGTGTTCATCAACAACAACAGCCTCGAACCAATCTGAGGTCTGTGTGCCTGAGGAGTTTACAATGAGGCCACAATTTGTCCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAGTCGAAGACTGGGAATCAAGTTGATCATATTGTGATGCCAATGATGAGCTTAGAGATGCCAGTGAAACATGAAGATGCCGATGCTAAATATCGCGATCAAAGCAATGATCAGGCAGTAATATCAGGAATTGAGATCCCTAGTTTGGATGAGTTGCAGAACTTTCAAATGAATGAAATGTTTGAGTCGAGGACCGGGAATCAAGTTGATCACATTGTGACACCAATGAACTTAGAGAAGCAAGTGAAGCATGAAGATATTGAAGCTAGGAATCGCGATCAGAGCAATGATCAAGCATTCTTATTAGGAACTGAGTTTCCTAGTCTGGATGAGTTGCAAAACACACAAATGGATGAAATGTTTGATGTGGAGGAGCTTCTAGGCCTTATAAATGGTGATTCCATATATGATTCAAGCTTCCTGCAGGGGAATGTGAATGGTTCTAATAACATGGCGCCTTCCCAAGTTGGCAATCTTGGGTCTGAGAAACCATCAAGCTTGTCATATCAGTTCCAAAATCCCGACGCGAAGCTGCTCGGAAGTCTCCAACACATGGAGCAAGCTCCGGCCGATGTCGACTATGGATTCGACTTCTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCTGCTGCAGATGATTGTGTTAGATACTTGAATTATGAGATGGGTGATTTGGGTTTTTGA 1299 44.57 MSLGDQYSDTISLFTNSIRKRKSRSRRDRSTVAETLAKWKAYNECVNSCNDGGKPVRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGQSARLNLPNITNNGQLKGILLEDYLGLRNSDSSTASSTCSSTTTASNQSEVCVPEEFTMRPQFVPSNIKIEDGEGESKTGNQVDHIVMPMMSLEMPVKHEDADAKYRDQSNDQAVISGIEIPSLDELQNFQMNEMFESRTGNQVDHIVTPMNLEKQVKHEDIEARNRDQSNDQAFLLGTEFPSLDELQNTQMDEMFDVEELLGLINGDSIYDSSFLQGNVNGSNNMAPSQVGNLGSEKPSSLSYQFQNPDAKLLGSLQHMEQAPADVDYGFDFLKQGREEDLNAAADDCVRYLNYEMGDLGF 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45837693 45838991 + Lag0030258.1 Lac8g2871 618705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2871 432 Pfam AP2 domain 81 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 FunFam Ethylene-responsive transcription factor 2 80 139 - -
Lac8g2871 432 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 16 295 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Lac8g2871 432 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677(InterPro)
Lac8g2871 432 SMART rav1_2 81 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g2871 432 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0179 Lac-Chr2:1361992 Lac8g2871 Lac-Chr8:45837693 2.90E-30 dispersed
Lac6g0459 Lac-Chr6:3751800 Lac8g2871 Lac-Chr8:45837693 7.00E-31 dispersed
Lac8g2871 Lac-Chr8:45837693 Lac9g2150 Lac-Chr9:41019618 7.80E-18 dispersed
Lac8g2871 Lac-Chr8:45837693 Lac8g2876 Lac-Chr8:45899438 1.60E-18 proximal
Lac9g2084 Lac-Chr9:40447814 Lac8g2871 Lac-Chr8:45837693 1.70E-48 transposed
Lac1g1826 Lac-Chr1:39954683 Lac8g2871 Lac-Chr8:45837693 1.50E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24364 PF00847 AP2 1.10E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2871 K09286 - csv:101215431 566.229