Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2875 ATGAGAGGTTGCCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCACTCCCACTTGCATTTTTGCCCCTTATTTCAGGTCTGACGAGCCAAAGAAATTTGCCAAAGTTCACAAAGTGTTTGGGGCCAGTAATGTGAGCAAGATTCTGACTGAGGTGCCTGAGGAGCAGAGAGAGGACACTGTCAACTCTTTGGCTTATGAGGCTGAGGCCAGGCTCAGGGACCCTGTTTATGGCTGCATCGGTGCCATTGCTTTGTTGCAGACTAAAATGGTCGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGCCTGGCTCGCTATGCTCATTCTAATCATAATCATAATAATAATAATGGTGCTTCTTCTTGTTGCTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGGGTGTTTTGGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTGAGTATCTCTGGGCAGAATTCTTCTGATGTCTCCCAGTATGGATATCTGTGTGACTTCACTCATTTTCCTTATCCTTTTAAAGCTTGA 558 43.55 MRGCHETRSSSSCAACKLLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYAHSNHNHNNNNGASSCCSSSSSSSSSLGVLENCVVNMSYGGLSISGQNSSDVSQYGYLCDFTHFPYPFKA 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45888163 45888720 + Lag0030262.1 Lac8g2875 618709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2875 185 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Lac8g2875 185 Coils Coil 91 111 - -
Lac8g2875 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 129 - -
Lac8g2875 185 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2875 Lac-Chr8:45888163 Lac9g0565 Lac-Chr9:10928658 4.60E-36 dispersed
Lac8g2875 Lac-Chr8:45888163 Lac8g0240 Lac-Chr8:2655989 1.10E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24365 PF03195 LOB 4.90E-39 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2875 - - - 0.0