Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g2898 | ATGGATACCTTCTTCCAAAAATTGGTGCTAAGCAGAAACCCTAGCATCCGCTTCTGCGCTCGTTCGTCGTCTCTCTCGGCATCCAATTTTACGGAGCTAGGTCAATTCCAACTTCAGGCAATGGCGACGACGGAGAACACGGTTCTGCAATTTTCACAGTCTTCTAACCCTTTATCTGCCAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCCGACCGAGTGATCGGTACTCTTCTCGGCTCTGTTCTGCCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCATCATAATATGTTAATTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCTTTGATACATGAATTTTATTCCAGAGAAGTTGCAAACCCCATTCACCTGACCGTTGATACTGGATTTAAAAATGGAGAAGGGACAATAAAAGCCTATATCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAGTTCCTTTAGACCTACGAATGGTTGAAGCTGAGCGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAGCTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGACTGCTTGCCTTAATCGATGATATCTACAAATATGTTGATAATGTTGTGGAAGGGCAGGTTAAGCCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCGAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTCCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACGCAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA | 978 | 44.07 | MDTFFQKLVLSRNPSIRFCARSSSLSASNFTELGQFQLQAMATTENTVLQFSQSSNPLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEVPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGQVKPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 46130231 | 46132992 | + | Lag0030285.1 | Lac8g2898 | 618732 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g2898 | 325 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 54 | 321 | - | GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER) | |
Lac8g2898 | 325 | SMART | pad1_6 | 59 | 190 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lac8g2898 | 325 | FunFam | Eukaryotic translation initiation factor 3 subunit F | 48 | 226 | - | - | |
Lac8g2898 | 325 | Gene3D | Cytidine Deaminase, domain 2 | 47 | 226 | - | - | |
Lac8g2898 | 325 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 58 | 321 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Lac8g2898 | 325 | ProSiteProfiles | MPN domain profile. | 60 | 191 | IPR037518 | - | |
Lac8g2898 | 325 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 58 | 162 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Lac8g2898 | 325 | CDD | MPN_eIF3f | 61 | 318 | IPR027531 | GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro) | |
Lac8g2898 | 325 | Pfam | Maintenance of mitochondrial structure and function | 212 | 319 | IPR024969 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g1893 | Lac-Chr1:40633337 | Lac8g2898 | Lac-Chr8:46130231 | 7.30E-26 | wgd | |
Lac10g3191 | Lac-Chr10:46060713 | Lac8g2898 | Lac-Chr8:46130231 | 5.60E-26 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g2898 | K03249 | - | csv:101205957 | 545.428 |