Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2898 ATGGATACCTTCTTCCAAAAATTGGTGCTAAGCAGAAACCCTAGCATCCGCTTCTGCGCTCGTTCGTCGTCTCTCTCGGCATCCAATTTTACGGAGCTAGGTCAATTCCAACTTCAGGCAATGGCGACGACGGAGAACACGGTTCTGCAATTTTCACAGTCTTCTAACCCTTTATCTGCCAAGGTTCACCCTCTGGTTATCTTCAACATTTGTGATTGCTATGTGAGGCGCCCGGACCAGGCCGACCGAGTGATCGGTACTCTTCTCGGCTCTGTTCTGCCTGATGGAACCGTTGATATTCGCAACTCTTATGCTGTTCCTCATAATGAGTTCTCGGATCAGGTTGCGTTGGATATTGATTATCATCATAATATGTTAATTTCCCACCAAAAAGTTAATCCAAAGGAAGTTATCGTTGGATGGTACTCAACTGGTACGGGAGTTACGGGTGGCAGTGCTTTGATACATGAATTTTATTCCAGAGAAGTTGCAAACCCCATTCACCTGACCGTTGATACTGGATTTAAAAATGGAGAAGGGACAATAAAAGCCTATATCTCTGTCAATTTGTCTCTGGGAGATAGACAACTTGCTGCTCAGTTTCAAGAAGTTCCTTTAGACCTACGAATGGTTGAAGCTGAGCGACTTGGATTTGATATACTGAAGACAACTTCTGTTGATAAGCTGCCAAATGATTTGGAAGGAATGGAAGCTTCAATGGAGAGACTGCTTGCCTTAATCGATGATATCTACAAATATGTTGATAATGTTGTGGAAGGGCAGGTTAAGCCAGACAACACGATAGGGAGATTTCTAGCTGACACTGTAGCCTCTCTTCCGAAACTGTCGCCATCTGCTTTTGATAAACTGATGAATGACAACGTCCAGGACCATTTGCTGTTGCTGTATTTGTCAAGTATCACCAGGACGCAGCTGAGCTTGGCTGAAAAGTTGAATACGGCTGCTCAGATTCTGTAA 978 44.07 MDTFFQKLVLSRNPSIRFCARSSSLSASNFTELGQFQLQAMATTENTVLQFSQSSNPLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLISHQKVNPKEVIVGWYSTGTGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISVNLSLGDRQLAAQFQEVPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMEASMERLLALIDDIYKYVDNVVEGQVKPDNTIGRFLADTVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46130231 46132992 + Lag0030285.1 Lac8g2898 618732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2898 325 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 54 321 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Lac8g2898 325 SMART pad1_6 59 190 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac8g2898 325 FunFam Eukaryotic translation initiation factor 3 subunit F 48 226 - -
Lac8g2898 325 Gene3D Cytidine Deaminase, domain 2 47 226 - -
Lac8g2898 325 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 58 321 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lac8g2898 325 ProSiteProfiles MPN domain profile. 60 191 IPR037518 -
Lac8g2898 325 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 58 162 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Lac8g2898 325 CDD MPN_eIF3f 61 318 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Lac8g2898 325 Pfam Maintenance of mitochondrial structure and function 212 319 IPR024969 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1893 Lac-Chr1:40633337 Lac8g2898 Lac-Chr8:46130231 7.30E-26 wgd
Lac10g3191 Lac-Chr10:46060713 Lac8g2898 Lac-Chr8:46130231 5.60E-26 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2898 K03249 - csv:101205957 545.428