Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2909 ATGATCCAAATAGATTGCATCAGCTGCCATAGCTTTGCCGTCCTTATTTCTGCAGATAATAGTAAGACCGAGCCCTGTCGAGAGGTGATTGGGGTCACAAGCGGCATCACAATTAATTTTCCAAAAACCAGCTTGTGGGGCTTTCCAGCATGCATTCGATCTACGGATTCTACGATCACACTGAGCCCAAAATATCGATCTTCCTTCTTCCTTCAAGTTCGACTGGCCAAAGAGCTCGTCTTACAGTTCTTGAGAAGAAACTCTTCTTCCCACTTTATTTTCCACCATCCGAGAGCTGAATTTCCTTCCTCACTTCACCCCAAGAACTCACTCTCGGATCGCAGCTATCTGCAAAATTTCGCTCTCCTGTTGGATCACCGTCTCCTAGACTTGAATTTCCTACCGTTTTCCCTTTGGGGAGACCAACAATTGCGCTCTTCTGGGTGGGAAGATATAGGGATAAATAACCATATTTCCATTACGGCTTCTTGCATAATTGAGGTGGGTGCAAAGCTAGGTATCTACTTTGTTCTTTCCTTCCTTGAGAAGGGAATGGCGAAGTTCAGGGATAGGACTGAAGATTTTAAAGATGTTGTGCGGCATTGTGCAGTTTCTTTAGGATATAACGAGTCCAAGTTGGCGGCTATTATGGCATCTTTCATTATTCAGAAACCTCGGCAAAGGTCACCTTTTCTTAAAGCTGCCCTGAAAACGCTTGAAAGCATTGGTGCTCTTGAAGAGTTTATGTTGAAACATCAAAAGGACTATGTAGATATGTATCGCACAACAGATCAAGAGAGAGACAATATTGAACATGAGGTAACTGCCTTCATCAAAGCATGCCAAGAACAAATCGATATACTAAAGAACTCAATTAATGAGGATGAAGCACACTCAAAGGGCTGGCTTGGTGCTAGGACTGATGATGCTAATGCCGATACTATTGCACACAAACATGGGGTGGTTCTAATTTTGAGTGAGAAACTCCATTCAGTAACATCACAATTTGATAAGCTAAGGGCCATTCGGTTTCAAGATATCATAAACAAAGCAGTACCAAGAAGAAAACCAAACCAAGTTAATAAACCACGTTCTGCAAATGCCCCTGAATATAATAATACGGAGCTGAGGGAACCTGATAATTTTGAGCATCAACCTGTCCGAGCCCAACAGCAACTGTTGGATGACGAAACTCGTGCACTTCAGGTTGAATTGACTAGTCTACTTGACGCAGTACAGGAAACAGAAACTAAGATGGTAGAGATGTCTGCTTTGAATCACCTAATGTCTACGCACGTTTTGCAGCAAGCACAACAAATTGAACTTCTTTATGAACAGGCTATTGAAGCTACGAAGAATGTTGAGCTCGGAGTGAACTCATTTGCTACTTCAATTTCTCAAAGTGCCCTGCATTCATTTGTAGCTGCTGAAGCATGA 1437 42.45 MIQIDCISCHSFAVLISADNSKTEPCREVIGVTSGITINFPKTSLWGFPACIRSTDSTITLSPKYRSSFFLQVRLAKELVLQFLRRNSSSHFIFHHPRAEFPSSLHPKNSLSDRSYLQNFALLLDHRLLDLNFLPFSLWGDQQLRSSGWEDIGINNHISITASCIIEVGAKLGIYFVLSFLEKGMAKFRDRTEDFKDVVRHCAVSLGYNESKLAAIMASFIIQKPRQRSPFLKAALKTLESIGALEEFMLKHQKDYVDMYRTTDQERDNIEHEVTAFIKACQEQIDILKNSINEDEAHSKGWLGARTDDANADTIAHKHGVVLILSEKLHSVTSQFDKLRAIRFQDIINKAVPRRKPNQVNKPRSANAPEYNNTELREPDNFEHQPVRAQQQLLDDETRALQVELTSLLDAVQETETKMVEMSALNHLMSTHVLQQAQQIELLYEQAIEATKNVELGVNSFATSISQSALHSFVAAEA 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46209678 46213591 - Lag0030296.1 Lac8g2909 618743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2909 478 Coils Coil 278 298 - -
Lac8g2909 478 Pfam SNARE-complex protein Syntaxin-18 N-terminus 189 270 IPR019529 -
Lac8g2909 478 MobiDBLite consensus disorder prediction 360 374 - -
Lac8g2909 478 PANTHER SYNTAXIN-18 185 466 - GO:0005783(PANTHER)|GO:0006890(PANTHER)|GO:0031201(PANTHER)
Lac8g2909 478 MobiDBLite consensus disorder prediction 353 382 - -
Lac8g2909 478 SUPERFAMILY t-snare proteins 246 457 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0895 Lac-Chr6:7895180 Lac8g2909 Lac-Chr8:46209678 3.50E-72 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2909 K08492 - csv:101207161 525.783