Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2911 ATGACGACAATCGAAAACTCCCACGTTGTTGCAATGGAGGAAGAGCAAGAAGAACGGCCTCGCCGGCTTTCTACAGCCGCCACTGTCGCCTCTCCGGCTTCTGATGATGTGCGGCGGTGCTCGGGCCAGTCGAGGGCTGAGATTGTGGGGGAGGCGGCGCCGGTGCCGGAGAAAAGAAGGGGATCCTCTGTCTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAACTGGGTTGTTCTTGTAAGGAAGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAGGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTGGTACTTATGAAGCCGATTCGACAGAGCAGCGCAATGAGTCAAGCGATGCAGCGACAGCAACCGCTGCAGCCTCCGTCGTGGTGCCACCACACTCTACAGAGGCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCATAG 657 52.66 MTTIENSHVVAMEEEQEERPRRLSTAATVASPASDDVRRCSGQSRAEIVGEAAPVPEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKEDLAAAHKQCAEAWFRIKGDITCEICGSIAHNVTGTYEADSTEQRNESSDAATATAAASVVVPPHSTEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46234570 46237033 + Lag0030298.1 Lac8g2911 618745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2911 218 SUPERFAMILY RING/U-box 88 145 - -
Lac8g2911 218 PANTHER ZINC FINGER, RING-CH-TYPE 27 217 - -
Lac8g2911 218 Pfam RING-variant domain 91 142 IPR011016 GO:0008270(InterPro)
Lac8g2911 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Lac8g2911 218 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270(InterPro)
Lac8g2911 218 SMART ringv_2 90 143 IPR011016 GO:0008270(InterPro)
Lac8g2911 218 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g3424 Lac-Chr1:53716956 Lac8g2911 Lac-Chr8:46234570 4.30E-16 dispersed
Lac7g2581 Lac-Chr7:44193092 Lac8g2911 Lac-Chr8:46234570 9.60E-09 dispersed
Lac1g0723 Lac-Chr1:17948921 Lac8g2911 Lac-Chr8:46234570 1.10E-10 transposed
Lac1g1919 Lac-Chr1:40874212 Lac8g2911 Lac-Chr8:46234570 1.40E-47 wgd
Lac10g3167 Lac-Chr10:45883863 Lac8g2911 Lac-Chr8:46234570 1.20E-50 wgd
Lac7g2790 Lac-Chr7:47030481 Lac8g2911 Lac-Chr8:46234570 7.70E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2911 - - - 0.0