Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2932 ATGGCATCAATTTCCATCCGGCTACTCCTCTTCGCGGCGGCGTTGCTCGCCGCTGCTGACACCGCAAACTCCATCACCCGATGCCCGGACTGCGGCGGCGCCGCCATCCCCTATCCTCTGAGCACCAGCCCGACCTGTGGGGACCAATCGTACAAGATCCGGTGCGACGCAGGCTCACTAAAATTCGACACGCTCAACAACACGTACCCGATCATCTCGATCAACCCGTCGATCCAACGGCTGGTGATCCGCCCCTCTAACTTCCTCCCAAACACGTGCGTCACAGAGGATATCGCCCACGACGGAATCAAACTGAACAGCACGGCTCCCTTCAACGTGACGAGCGGGAACACGATCCTCTACTTCAACTGCACGGATTCGCTGCTGCGCTCGCCGTTGAACTGCTCGTCGACGAGCCTGTGCCATTCGTACATCAACGGCACGAGGGGTGCGGCGGCGTGCGAGGCGGCGCCGCTGTGCTGCACGTTTCGGGCAGGTGGGTCGTCGAATTCGTACATGATTCGGGTGAGGGAGTCGGGTTGTAGTGCGTACACGAGCTTTGTGAACTTGAACCCGAGCTTGGGTTTACTGCAGTGGCCTGAACCGGGGCTGGAGTTGCAGTGGCTGTTGCCGATGGAGCCGGTTTGTAATACGCAGGCTGATTGTGATGCGAACGCGGCTTGTGGCGTTGATTCGAATGGGTCTGGCTTGAGACGGTGCCTTTGTAATTCGGGGTTTGTGTGGGACCCGGTTGCTGGGGTCTGCTCTCAAAATACGTGTCATGATCCTGACGGTTGTAAGAAGTCTCATACTGCACTAATAGCCGGCCTAGTATCCGGCGTCGGCGCAGCGCTGATCATCACAACAATCGCCATCTTCCTCTACAATCGGCACAGACGAGCGAAAGAAGCTCAAGAGCGTTTAACGAGGGAGCGTGAAGCAATTCTGAACTCCAACGGCGGAGCCGGTAGGGCTGCAAAGGTCTTCACCGGCAAAGACATCAAGAGGGCCACCCACAACTTCTCCGTCGACCGCCTTCTGGGTGCCGGCGGCTACGGCGAGGTCTACAAAGGCGTTCTGGGCGACGGCACCACCGTCGCCGTCAAGTGCGCCAAGCTCGGAAACGCCAAAGGCACCGATCAAGTCCTGAATGAAGTCCGAATCCTCTGCCAAGTCAACCACCGGAGCCTTGTCCGCCTCCTCGGGTGCTGCGTCGAGTTGGAGCAGCCGATTTTGGTCTACGAGTATATCCCCAACGGCACTCTTCTCGACCATTTACAAGGTACCAATGACATGAACCTATTATCGTGGAATCAACGACTCCAAATCGCACAGGGCACGGCGGAGGGACTAGCATACCTTCATTTCTCAGCAGTGCCGCCAATCTACCACCGAGATGTAAAATCTAGCAACATCCTTCTAGACGAGAAGCTCAGTCCCAAAGTTTCAGATTTCGGCCTCTCTAGATTGGCCGAAACAGACCTAAGCCACATCTCAACTTGCGCACAAGGAACTCTCGGCTACCTAGATCCAGAATACTACCGCAACTACCAGTTGACAGATAAGAGCGATGTGTATAGTTTTGGAGTGGTTTTGTTGGAGTTGTTGACGTCGCAAAAGGCAATCGACTTCAACAGGGAGGCCGACGACGTGAACTTGGCAGTTTACGTGCAACGGATGGTGGAGGAGGAGAAATTGGTGGATGCCATTGATCCGAGGCTGAAGAAGGGAGCTAGTGATATGGAGATTGAGACTATGAAGGCTTTGGGGTTCTTGGCAGTGGGATGCTTGGAAGAGAGGAGACAGAATAGGCCTTCCATGAAAGAAGTGGTGGAGGAGATTGAGTACATCATTAGCATTGCCTCTGCCAAGAGTTGA 1878 55.22 MASISIRLLLFAAALLAAADTANSITRCPDCGGAAIPYPLSTSPTCGDQSYKIRCDAGSLKFDTLNNTYPIISINPSIQRLVIRPSNFLPNTCVTEDIAHDGIKLNSTAPFNVTSGNTILYFNCTDSLLRSPLNCSSTSLCHSYINGTRGAAACEAAPLCCTFRAGGSSNSYMIRVRESGCSAYTSFVNLNPSLGLLQWPEPGLELQWLLPMEPVCNTQADCDANAACGVDSNGSGLRRCLCNSGFVWDPVAGVCSQNTCHDPDGCKKSHTALIAGLVSGVGAALIITTIAIFLYNRHRRAKEAQERLTREREAILNSNGGAGRAAKVFTGKDIKRATHNFSVDRLLGAGGYGEVYKGVLGDGTTVAVKCAKLGNAKGTDQVLNEVRILCQVNHRSLVRLLGCCVELEQPILVYEYIPNGTLLDHLQGTNDMNLLSWNQRLQIAQGTAEGLAYLHFSAVPPIYHRDVKSSNILLDEKLSPKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTSQKAIDFNREADDVNLAVYVQRMVEEEKLVDAIDPRLKKGASDMEIETMKALGFLAVGCLEERRQNRPSMKEVVEEIEYIISIASAKS 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46347207 46350661 - Lag0030319.1 Lac8g2932 618766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2932 625 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2932 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524(InterPro)
Lac8g2932 625 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 27 617 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lac8g2932 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2932 625 SMART serkin_6 341 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g2932 625 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Lac8g2932 625 CDD STKc_IRAK 347 615 - -
Lac8g2932 625 Gene3D Phosphorylase Kinase; domain 1 317 416 - -
Lac8g2932 625 Pfam Protein tyrosine and serine/threonine kinase 343 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g2932 625 FunFam Wall-associated receptor kinase-like 20 302 416 - -
Lac8g2932 625 FunFam Wall-associated receptor kinase-like 20 417 625 - -
Lac8g2932 625 SUPERFAMILY Protein kinase-like (PK-like) 327 614 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g0368 Lac-Chr6:3054720 Lac8g2932 Lac-Chr8:46347207 5.60E-79 dispersed
Lac8g1781 Lac-Chr8:36002301 Lac8g2932 Lac-Chr8:46347207 4.70E-79 dispersed
Lac8g1782 Lac-Chr8:36015451 Lac8g2932 Lac-Chr8:46347207 9.20E-75 dispersed
Lac8g2932 Lac-Chr8:46347207 Lac8g3008 Lac-Chr8:46919788 1.00E-71 dispersed
Lac10g2937 Lac-Chr10:43980454 Lac8g2932 Lac-Chr8:46347207 1.70E-170 transposed
Lac1g1985 Lac-Chr1:41423375 Lac8g2932 Lac-Chr8:46347207 9.80E-187 transposed
Lac10g3138 Lac-Chr10:45654609 Lac8g2932 Lac-Chr8:46347207 1.90E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86408 PF00069 Pkinase 1.50E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2932 - - - 0.0