Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2934 ATGGCCGAGATTTGCTTCCTTGGAGATGGCGAACCTTCGCCCCCGCCAGATTCCACTCGCCGGAAAATCAACTTTCTTCAGCATGCTGTCGCCGATCTCACTGCTTCTTCGTCGTCGTCGTCGTCGCCGCCGCCGCACAACGGACGGAAACGCCGCAGAGTGCATCATCTTCTCCGGCGGTGCCAAAATGCAGAGGAAAGCAGCCTGCAGAGGAATCATGATGTTCATCAGACGGTTAAGTATAGAGTGACCTCTGTTTGCGGAAGAAGAAGAGAAATGGAGGATGCCGTTTCGGTTCATCCCTTTTTCGCGACTCTCAAAAATCAACCCCAAAATCCTCTGCACTTTTTTGGGGTCTTCGACGGCCATGGTTGCTCTCATGTGTCGATGAACTGCGAGAATCGGATGCATGAAATAGTGAAGGAAGAGATCGAGAGCGAATTAGGAGAAACAGAGGATTGGAAGAAATTGATGCAACGAAGCTTTGCGCGTATGGATGACGAAGTGACGGAGTACAGCCATGACATCAAACAGAAAGAAAGCTCTAATATTACTTGCAGATGCGAACTCCAGACTCCTCATCAATATGACACTGTCGGATCCACCGCTCTCGTCGCCATCGTCGCGCCCGACAAATTCATCGTCTCCAACTGCGGCGACTCCCGCGCCATTCTTTGCCGGAAAAGTGCCGTCGTTCCCCTTTCCTCCGACCATAAGCCAGATCGGCCTGACGAACTGTCCCGTATAGAATCTACGGGCGGTCGCGTGATATACTGGGATGGGGCGAGAGTGCTGGGAGTTTTAGCGACGTCGAGAGCGATAGGCGACGGTTATCTAAAACCGTACGTGATATCGGAGCCGGAGGTGGTGGAAATGGATAGGACGGCGGAGGATGAGTTCATAGTATTGGCGAGCGACGGGCTGTGGGACGTGGTTTCAAATGAAAGTGCATGCGACGCAGTCCGAATGTGCATGCGGGCTCAGCGGTCGACGTCGTCGTCGTTGAGATATACGGGCAGTAGCTCAGATAAAAGTTGCTCGGACGCGTCGATTGTGCTGACGAAGTTGGCAATGGCAAAGCATAGTTCAGATAACATTAGCGTGGTGGTGATAGATTTGAGAAGGGATCATCATCACTAG 1140 52.19 MAEICFLGDGEPSPPPDSTRRKINFLQHAVADLTASSSSSSSPPPHNGRKRRRVHHLLRRCQNAEESSLQRNHDVHQTVKYRVTSVCGRRREMEDAVSVHPFFATLKNQPQNPLHFFGVFDGHGCSHVSMNCENRMHEIVKEEIESELGETEDWKKLMQRSFARMDDEVTEYSHDIKQKESSNITCRCELQTPHQYDTVGSTALVAIVAPDKFIVSNCGDSRAILCRKSAVVPLSSDHKPDRPDELSRIESTGGRVIYWDGARVLGVLATSRAIGDGYLKPYVISEPEVVEMDRTAEDEFIVLASDGLWDVVSNESACDAVRMCMRAQRSTSSSLRYTGSSSDKSCSDASIVLTKLAMAKHSSDNISVVVIDLRRDHHH 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46361483 46363014 - Lag0030321.1 Lac8g2934 618768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2934 379 ProSiteProfiles PPM-type phosphatase domain profile. 80 373 IPR001932 -
Lac8g2934 379 PANTHER PROTEIN PHOSPHATASE 68 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lac8g2934 379 MobiDBLite consensus disorder prediction 1 20 - -
Lac8g2934 379 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169(InterPro)
Lac8g2934 379 FunFam Protein phosphatase 2C 50 79 379 - -
Lac8g2934 379 Pfam Protein phosphatase 2C 80 366 IPR001932 -
Lac8g2934 379 MobiDBLite consensus disorder prediction 32 53 - -
Lac8g2934 379 SMART PP2C_4 66 371 IPR001932 -
Lac8g2934 379 SUPERFAMILY PP2C-like 76 374 IPR036457 -
Lac8g2934 379 CDD PP2Cc 83 373 IPR001932 -
Lac8g2934 379 Gene3D - 68 378 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2869 Lac-Chr5:46920239 Lac8g2934 Lac-Chr8:46361483 6.30E-44 dispersed
Lac6g0172 Lac-Chr6:1385544 Lac8g2934 Lac-Chr8:46361483 1.40E-59 dispersed
Lac8g2934 Lac-Chr8:46361483 Lac8g3063 Lac-Chr8:47318245 1.80E-23 dispersed
Lac5g3058 Lac-Chr5:48393851 Lac8g2934 Lac-Chr8:46361483 1.10E-16 transposed
Lac7g2763 Lac-Chr7:46777990 Lac8g2934 Lac-Chr8:46361483 1.40E-101 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2934 K14497 - csv:101220425 466.848