Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2937 ATGGCGAATCCATGGTGGGGTGGAATTGGGAATCTTTCGATCAGGGGAGTTGATTCCTTATCTTCCTTTGATCTTAAGAACCCACAAGAACAAGACCATGAACAACGACAACATCGTCAAATTGGATCTTCAAGTGACAACCCTGATTCCAACACCCGACAAGAAGAACACGATATTAAGAATGAAGATCGGCATGGAGCTAAGAACACTAGGCGGCCACGAGGGCGGCCGCCGGGCTCAAAAAACAAGCCGAAGCCACCGATTGTCCTCACCAAAGCCACTCCCAACGCTCTCCAAAGCCACGTATTCGAAATCGCCGCCGCCACCGACATCGCCCACTCCATTTCCACCTTCGCCAACCGCCGCCGCCGTGGAGTCTCCATCCTCAGCGCCACCGGCCTCGTCGCCAACGTCACTCTCCGCCAGCCCGCCGGCGCCGTCATCACCCTCCACGAACGCTTCGAGATCCTGTCTCTCTCCGGCGCCTTCCTCCCGCCGCCGTCCCCCCAGGGCGCCACTGGCTTGACCGTCTATCTCGCCGGCGGCCAGGGACGCGTCGTCGGCGGCATGGTCGCCGGTCCCTTCGTCGCCGCCGGCCCGGTCATAGTAATTGCAGCTTCGTTCACCAACGCCATATATGAAAGATTGCCGATTGAGGAAGATGATCAGAAAGAGAATGCAAATGAGGAAATGAAAATGGAAAAGCAAGAGGAAGATCATAGTAATGGAAACAATTCAGTGGCCGGAGAATCATCGGCCGGAGGAGCTGCAGCAGCTTCTTCTTTGGCAGTTTACACTCAAATTTCTCAAGATGTGTTCTGGGCTCCTCTTCACCTTCCTCCTCCATCTTATTAA 855 55.09 MANPWWGGIGNLSIRGVDSLSSFDLKNPQEQDHEQRQHRQIGSSSDNPDSNTRQEEHDIKNEDRHGAKNTRRPRGRPPGSKNKPKPPIVLTKATPNALQSHVFEIAAATDIAHSISTFANRRRRGVSILSATGLVANVTLRQPAGAVITLHERFEILSLSGAFLPPPSPQGATGLTVYLAGGQGRVVGGMVAGPFVAAGPVIVIAASFTNAIYERLPIEEDDQKENANEEMKMEKQEEDHSNGNNSVAGESSAGGAAAASSLAVYTQISQDVFWAPLHLPPPSY 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46379978 46380832 + Lag0030324.1 Lac8g2937 618771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2937 284 CDD DUF296 101 208 IPR005175 -
Lac8g2937 284 Coils Coil 219 239 - -
Lac8g2937 284 MobiDBLite consensus disorder prediction 219 252 - -
Lac8g2937 284 PIRSF ESCAROLA 13 275 IPR014476 GO:0003680(InterPro)
Lac8g2937 284 ProSiteProfiles PPC domain profile profile. 95 229 IPR005175 -
Lac8g2937 284 MobiDBLite consensus disorder prediction 50 69 - -
Lac8g2937 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 224 - -
Lac8g2937 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 251 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac8g2937 284 MobiDBLite consensus disorder prediction 219 241 - -
Lac8g2937 284 MobiDBLite consensus disorder prediction 23 90 - -
Lac8g2937 284 FunFam AT-hook motif nuclear-localized protein 98 224 - -
Lac8g2937 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 209 IPR005175 -
Lac8g2937 284 Gene3D - 99 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0635 Lac-Chr7:5083327 Lac8g2937 Lac-Chr8:46379978 3.40E-57 dispersed
Lac8g2937 Lac-Chr8:46379978 Lac13g1008 Lac-Chr13:8513065 7.30E-57 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2937 - - - 0.0