Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2943 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTCTACCCGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCTCTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTGAACTCTCACCAGATGTCACCAAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTATGCGACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGACTATGAAACTTTGAGAGCATTGGATTCCGACAATGTTCCAACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTACTCAAAGTGACCCCGCTGTGAATCAACAGGCCTCATCTTCAGAATCTAATGAGAAGAGACCAGATTCAGTTAATGCAGTTGGCGGTACTAAGACCTCAGAGGATGAACTTACATGTAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTACCATGTTTGCATCAGTTCCATGCCAACTGCATAGACCCATGGCTGCGGCAGCAGGGAACGTGCCCGGTTTGTAAATTCCGTGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA 828 44.93 MSFVFRGTRVPDIENGLSGFLPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMSEEQINALPVHKYKVSGTQSDPAVNQQASSSESNEKRPDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46413293 46415610 + Lag0030330.1 Lac8g2943 618777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2943 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Lac8g2943 275 MobiDBLite consensus disorder prediction 176 206 - -
Lac8g2943 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 260 IPR013083 -
Lac8g2943 275 SUPERFAMILY RING/U-box 208 262 - -
Lac8g2943 275 CDD RING-H2_PA-TM-RING 213 255 - -
Lac8g2943 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Lac8g2943 275 Pfam Ring finger domain 213 255 IPR001841 -
Lac8g2943 275 SMART ring_2 214 254 IPR001841 -
Lac8g2943 275 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2287 Lac-Chr5:41550728 Lac8g2943 Lac-Chr8:46413293 2.90E-07 dispersed
Lac8g2320 Lac-Chr8:41349693 Lac8g2943 Lac-Chr8:46413293 3.60E-08 dispersed
Lac8g2943 Lac-Chr8:46413293 Lac10g2738 Lac-Chr10:41834505 3.50E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2943 K16283 - csv:101216306 493.426