Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g2973 | ATGGAGGAAAATTCAAGCCTTGTCGCAGAATCAACTCTCACAAACGCCATGGAAGCAGAGCCTCAAGAAGAAGACAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACGCTTTCTTCCAGTCCTCTCGCCATTGTTGGAGCCAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAACGAGAATGATCTGTTTAAACACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATGCTCGAAATGGACATTGGCTTGTCTCGTTGGACTTCTTACTGGGATCATTGCCACTCTCATCAATCTCGCCATTGAAAACATTGCTGGTTACAAGCTTTTGACAGTGGTTGGTTACATAAAAGAAGAAAGGTACTTAATGGGGTTCGTCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTCGGCGCCACGACGTTGATCGTTAAGATCATTGGGAGCATTGGAGCAGTGGCTGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTTGGGCAAGGCGGGCCGGACAATTATCGAGTCAAGTGGACGTGGCTACGCTATTTCAACAATGATCGGGATCGTCGGGATCTTATCACTTGCGGGGCGTCGTCGGGGGTTTGTGCAGCGTTCCGAGCTCCGGTCGGGGTCACAGCCATTGTTGTGGTGGTGCTGAGGACATTCATTGAAATATGCAAGGCAGGGGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTGAGTTACCATATAATGGACATTATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAACCATCTTTTGCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAGGGAAAAATACACAAGCTGTTATTGAGCTTAGGAGTTTCACTCTTCACTTCAATCTGCCAATACAGTCTCCCTTACCTTGTCCAATGCACCCCCTGCAACCCTGAACTTTCAGATTCCGCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCGAAAGGCCATTACAACGACCTCGCTACCCTTCTCCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAACACTCCCGCCGAGTACCAGCCCCTTTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTTTTAGGGTTAATCACATTCGGCATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGCTCCGGCTATGGCCGCCTCATCGGCCTCCTTATGCGGCCCTACACCAATCTCGATCAGGGGCTCTTGGCTGTTCTCGGTGCCGCCTCGTTGATGTCCGGCTCCATGAGGATGACGGTTTCGCTCTGTGTTATATTCCTCGAACTCACCAACAATCTCCTCCTGCTTCCGATTACCATGATTGTCCTTCTGATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTACGAGATCATCCTGCATTTGAAGGGGCTTCCGTTCTTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTCGGAGAGCTCGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGATTGGAGAAAGTGTCTCGGATCGTGGAGGTTCTCAAGAACACTACGCATAACGGGTTCCCCGTCGTGGACGCGGATTCGGTGGTGCCGCCGGTGGGGATGGCGGTCGGCGCGACGGAGCTGCACGGGCTGGTGTTGAGAGCACATCTGCTGCAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGAGGAGGACGGAGGAATGGGAGGTGAGGGAGAAATTTTCATGGGTGGAATTGGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGCAGTGACGAAGGAGGAGATGGAGATGTACGTTGATCTTCATCCTCTTACAAACACGACGCCTTACACAGTAATGGAGAGCATGTCGGTGGCCAAAGCTCTGGTTCTGTTCAGGCAAGTGGGGCTCCGCCATTTGCTCATCGTGCCCAAGTATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATTTTGACGAGGCAAGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAAGGCAATGAGAAAGGGAACTGA | 2301 | 50.85 | MEENSSLVAESTLTNAMEAEPQEEDRDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYICSKWTLACLVGLLTGIIATLINLAIENIAGYKLLTVVGYIKEERYLMGFVYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGVTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGKIHKLLLSLGVSLFTSICQYSLPYLVQCTPCNPELSDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTPAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDADSVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEEWEVREKFSWVELAEREGKIEELAVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGNEKGN | 766 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 46627670 | 46631322 | - | Lag0030360.1 | Lac8g2973 | 618807 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g2973 | 766 | PRINTS | Plant CLC chloride channel signature | 267 | 277 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Plant CLC chloride channel signature | 65 | 73 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Plant CLC chloride channel signature | 410 | 426 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Plant CLC chloride channel signature | 285 | 292 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Lac8g2973 | 766 | ProSiteProfiles | CBS domain profile. | 693 | 758 | IPR000644 | - | |
| Lac8g2973 | 766 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 269 | 746 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Lac8g2973 | 766 | Gene3D | - | 578 | 746 | IPR046342 | - | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 191 | 210 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 458 | 478 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 490 | 506 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 508 | 527 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 255 | 274 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 160 | 177 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | PRINTS | Chloride channel signature | 546 | 560 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | SUPERFAMILY | CBS-domain pair | 563 | 745 | IPR046342 | - | |
| Lac8g2973 | 766 | CDD | ClC_6_like | 60 | 559 | - | - | |
| Lac8g2973 | 766 | SUPERFAMILY | Clc chloride channel | 69 | 561 | IPR014743 | - | |
| Lac8g2973 | 766 | Gene3D | Clc chloride channel | 82 | 561 | - | - | |
| Lac8g2973 | 766 | Pfam | Voltage gated chloride channel | 148 | 539 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Lac8g2973 | 766 | Pfam | CBS domain | 694 | 745 | IPR000644 | - | |
| Lac8g2973 | 766 | SMART | cbs_1 | 696 | 749 | IPR000644 | - | |
| Lac8g2973 | 766 | SMART | cbs_1 | 581 | 641 | IPR000644 | - | |
| Lac8g2973 | 766 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Lac8g2973 | 766 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 579 | 747 | - | - | |
| Lac8g2973 | 766 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g2902 | Lac-Chr6:46637919 | Lac8g2973 | Lac-Chr8:46627670 | 4.70E-199 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g2973 | K05016 | - | csv:101210008 | 1402.88 |