Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2973 ATGGAGGAAAATTCAAGCCTTGTCGCAGAATCAACTCTCACAAACGCCATGGAAGCAGAGCCTCAAGAAGAAGACAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACGCTTTCTTCCAGTCCTCTCGCCATTGTTGGAGCCAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAACGAGAATGATCTGTTTAAACACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATGCTCGAAATGGACATTGGCTTGTCTCGTTGGACTTCTTACTGGGATCATTGCCACTCTCATCAATCTCGCCATTGAAAACATTGCTGGTTACAAGCTTTTGACAGTGGTTGGTTACATAAAAGAAGAAAGGTACTTAATGGGGTTCGTCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACTGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTATCTCAATGGCATAGATACTCCTAATATGTTCGGCGCCACGACGTTGATCGTTAAGATCATTGGGAGCATTGGAGCAGTGGCTGCAGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGCATTGCCTCCTTACTTGGGCAAGGCGGGCCGGACAATTATCGAGTCAAGTGGACGTGGCTACGCTATTTCAACAATGATCGGGATCGTCGGGATCTTATCACTTGCGGGGCGTCGTCGGGGGTTTGTGCAGCGTTCCGAGCTCCGGTCGGGGTCACAGCCATTGTTGTGGTGGTGCTGAGGACATTCATTGAAATATGCAAGGCAGGGGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATAATGTTTGATGTCAGTGGTGTTTCTGTGAGTTACCATATAATGGACATTATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAACCATCTTTTGCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAGGGAAAAATACACAAGCTGTTATTGAGCTTAGGAGTTTCACTCTTCACTTCAATCTGCCAATACAGTCTCCCTTACCTTGTCCAATGCACCCCCTGCAACCCTGAACTTTCAGATTCCGCCTGCCCCACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCGAAAGGCCATTACAACGACCTCGCTACCCTTCTCCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAACACTCCCGCCGAGTACCAGCCCCTTTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTTTTAGGGTTAATCACATTCGGCATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGCTCCGGCTATGGCCGCCTCATCGGCCTCCTTATGCGGCCCTACACCAATCTCGATCAGGGGCTCTTGGCTGTTCTCGGTGCCGCCTCGTTGATGTCCGGCTCCATGAGGATGACGGTTTCGCTCTGTGTTATATTCCTCGAACTCACCAACAATCTCCTCCTGCTTCCGATTACCATGATTGTCCTTCTGATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTACGAGATCATCCTGCATTTGAAGGGGCTTCCGTTCTTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTCGGAGAGCTCGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGATTGGAGAAAGTGTCTCGGATCGTGGAGGTTCTCAAGAACACTACGCATAACGGGTTCCCCGTCGTGGACGCGGATTCGGTGGTGCCGCCGGTGGGGATGGCGGTCGGCGCGACGGAGCTGCACGGGCTGGTGTTGAGAGCACATCTGCTGCAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGAGGAGGACGGAGGAATGGGAGGTGAGGGAGAAATTTTCATGGGTGGAATTGGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGCAGTGACGAAGGAGGAGATGGAGATGTACGTTGATCTTCATCCTCTTACAAACACGACGCCTTACACAGTAATGGAGAGCATGTCGGTGGCCAAAGCTCTGGTTCTGTTCAGGCAAGTGGGGCTCCGCCATTTGCTCATCGTGCCCAAGTATGAAGCAGCTGGGGTTCCGCCTGTAATTGGGATTTTGACGAGGCAAGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGCCAGAATCAAAGGCAATGAGAAAGGGAACTGA 2301 50.85 MEENSSLVAESTLTNAMEAEPQEEDRDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYICSKWTLACLVGLLTGIIATLINLAIENIAGYKLLTVVGYIKEERYLMGFVYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGVTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGKIHKLLLSLGVSLFTSICQYSLPYLVQCTPCNPELSDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTPAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMSGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLKNTTHNGFPVVDADSVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEEWEVREKFSWVELAEREGKIEELAVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVPPVIGILTRQDLRPYNILSAFPHLARIKGNEKGN 766
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 46627670 46631322 - Lag0030360.1 Lac8g2973 618807
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2973 766 PRINTS Plant CLC chloride channel signature 267 277 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac8g2973 766 PRINTS Plant CLC chloride channel signature 65 73 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac8g2973 766 PRINTS Plant CLC chloride channel signature 410 426 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac8g2973 766 PRINTS Plant CLC chloride channel signature 285 292 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Lac8g2973 766 ProSiteProfiles CBS domain profile. 693 758 IPR000644 -
Lac8g2973 766 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 269 746 IPR051280 GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER)
Lac8g2973 766 Gene3D - 578 746 IPR046342 -
Lac8g2973 766 PRINTS Chloride channel signature 191 210 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 458 478 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 490 506 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 508 527 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 255 274 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 160 177 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 PRINTS Chloride channel signature 546 560 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 SUPERFAMILY CBS-domain pair 563 745 IPR046342 -
Lac8g2973 766 CDD ClC_6_like 60 559 - -
Lac8g2973 766 SUPERFAMILY Clc chloride channel 69 561 IPR014743 -
Lac8g2973 766 Gene3D Clc chloride channel 82 561 - -
Lac8g2973 766 Pfam Voltage gated chloride channel 148 539 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lac8g2973 766 Pfam CBS domain 694 745 IPR000644 -
Lac8g2973 766 SMART cbs_1 696 749 IPR000644 -
Lac8g2973 766 SMART cbs_1 581 641 IPR000644 -
Lac8g2973 766 MobiDBLite consensus disorder prediction 1 18 - -
Lac8g2973 766 CDD CBS_pair_voltage-gated_CLC_euk_bac 579 747 - -
Lac8g2973 766 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2902 Lac-Chr6:46637919 Lac8g2973 Lac-Chr8:46627670 4.70E-199 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2973 K05016 - csv:101210008 1402.88