Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2977 ATGGAAGTCGAAGCGCAATCTGAGTTCCCGTACTGGAAGCCTTTCCAACGGAGGTTCGATCCTGATTCTCCCTTCTTTGCCTCTGGAAATGTCGAGCGCGAAATCTTGGCCAAACAGGTTGCCTTGGATTTAACCGAAGATGAAAAGCTACAGCTGCATAATATGGCAGTTGATGCCGGCAGGGAAATCTTTTGCCCAATTGTTGGCTGCGGTGCGCACTTGAAATCTCTGGATGACTTTGAAGATCATTACAATTCGCGGCATACTGCCTCCTGTTCAGTTTGCCCTAGAGTTTACCCAACATCACGCCTACTTAGTCTGCATGTGTCTGAGACGCATGACTCGTTCTTTCAGGCAAAAGTCGCTCGTGGCTATGACATGTACGAATGCCTGGTGGAAGGTTGTGGTTTGAAGTTCAAGAGCTACAAAAGCAGACAGCAGCATCTAGTGGACAAGCATAAATTTTCTGCTTCATTTGAATTCTTTAAGAAAGCTCATCCATCCAAGAAACAAAGACAGAAATTACATCGTAAACAAGTACTTCAAGAAAGGGAAGAAACTTCCAAAATGGAAGTCGAGAATGAAACTATGGATGGCCTCATTTCAGGAGTATCTAAACTAAGTACTTCGGACTCAACTCCATCGTCAGTCAGCTTTGGTCGAAGGCACACTCGAGGGTTAACGTTTGTTCCTCGATCAGTTCAGCGTGAAAAAGATAATCTGGTATTGCAGCATTCTGGAGTTAGAATCTTTTTTCATTTGATATCGACCATTGACCTCATCGATGGGATGATTCATAGTCATTTTGTAGTTGCGATTTGTGCAAGCTTTGTGGCGGTTGTCGTTCCAAGGATAAGTGTTGCAGCCATGAGTTTAAACCTAGTTGGTGCATTCAGAGCTCTCTCTCTCGTCTCTTCCTCTTCTTCCTCTTTCTTCAAAGGCGATTTCGCTCCCATTCAAGCCCCTCCCAAGCTCTCCGTCTCCTTCCCAAACCGATTCCCTTTAACCATTGAAAATGCCCACAAGAAAGGAGCTGGAAGCACCAAGAATGGCCGAGATTCCAAGGGCCAGAGGCTCGGCGTTAAAATCTTTGGCGATCAACTCGCCAAGCCCGGTTCCATTATCGTCCGTCAGCGCGGAACCAAGTTCCATGCCGGAAAGAATGTGGGACTTGGCAAGGACCATACGATTTTCTCCTTGATTGATGGGCTTGTAAAATTCGAGAAGTATGGACCTGACAAGAAGAAGGTGAGTGTCTACCCAAGAGAAGTGCAGCCTGAGAATCCCAACAGCTACAGAGCAAGGAAGAGGGAGTATTTCAGGCTGCAAAGAGAGCGCAAGAAAGCAAGAAAGGAAGGCATTATTGCTCAACCCCAATTAGTATTAGCTTCCACTGATGCTACAGAATCCAATCCAGCTTGCTGA 1425 45.96 MEVEAQSEFPYWKPFQRRFDPDSPFFASGNVEREILAKQVALDLTEDEKLQLHNMAVDAGREIFCPIVGCGAHLKSLDDFEDHYNSRHTASCSVCPRVYPTSRLLSLHVSETHDSFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFSASFEFFKKAHPSKKQRQKLHRKQVLQEREETSKMEVENETMDGLISGVSKLSTSDSTPSSVSFGRRHTRGLTFVPRSVQREKDNLVLQHSGVRIFFHLISTIDLIDGMIHSHFVVAICASFVAVVVPRISVAAMSLNLVGAFRALSLVSSSSSSFFKGDFAPIQAPPKLSVSFPNRFPLTIENAHKKGAGSTKNGRDSKGQRLGVKIFGDQLAKPGSIIVRQRGTKFHAGKNVGLGKDHTIFSLIDGLVKFEKYGPDKKKVSVYPREVQPENPNSYRARKREYFRLQRERKKARKEGIIAQPQLVLASTDATESNPAC 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46661013 46665011 - Lag0030364.1 Lac8g2977 618811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2977 474 ProSitePatterns Zinc finger C2H2 type domain signature. 130 153 IPR013087 -
Lac8g2977 474 Coils Coil 432 452 - -
Lac8g2977 474 Hamap Large ribosomal subunit protein bL27 [rpmA]. 339 422 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 FunFam 50S ribosomal protein L27 344 454 - -
Lac8g2977 474 ProSitePatterns Ribosomal protein L27 signature. 372 386 IPR018261 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 PRINTS Ribosomal protein L27 signature 367 391 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 PRINTS Ribosomal protein L27 signature 342 366 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 PRINTS Ribosomal protein L27 signature 392 416 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 SUPERFAMILY Ribosomal L27 protein-like 340 421 - -
Lac8g2977 474 Gene3D - 344 451 - -
Lac8g2977 474 NCBIfam 50S ribosomal protein L27 339 419 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 PANTHER UNCHARACTERIZED 5 238 IPR039258 -
Lac8g2977 474 SMART c2h2final6 90 113 IPR013087 -
Lac8g2977 474 SMART c2h2final6 128 153 IPR013087 -
Lac8g2977 474 SMART c2h2final6 63 88 IPR013087 -
Lac8g2977 474 Pfam Ribosomal L27 protein 340 419 IPR001684 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Lac8g2977 474 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g1439 Lac-Chr4:32829678 Lac8g2977 Lac-Chr8:46661013 3.10E-22 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24371 PF01016 Ribosomal_L27 2.10E-35 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2977 - - - 0.0