Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2978 ATGGCAGCCATGGCAATGCGAGTGGTGCTGTTTTTGGCTCTCGTCTGTGTACTCATGGGGCTCGGCGAGGGCCAGCTATGGCCGAACTTCTACAATTCGACGTGCCCAAATGTCGAACAAATCGTTCGCCAAGCTGTTAGCCTAAAGTTTAGCCAAACTTTCGTTACCGTTCCTGCAACTTTGAGGTTGTTCTTCCATGACTGCTTTGTTACGGGATGTGATGCTTCAGTTATGATAGCGTCGGCGAGTGGCGACGCCGAGAAGGACGCAGAAGACAATCAGTCACTGGCGGGAGATGGGTTTGACACAGTGATTAAGGCGAAGCAGGCGGTGGAAGCTCAGTGTCCTGGAATAGTTTCGTGTGCTGATATCATGGCCCTCGCGGCTAGGGACGTCGTCGTTCTGGCCGGAGGCCCAAGTTTCTCGGTCGAACTAGGACGCCGAGACGGGCTAATCTCCAACGCGTCGCTAGTAGCCGGAAAGTTACCAGGACCAAGCTTCAACCTGACCCAACTAAACGCCATGTTCGCCAAAAACAACCTGACCCAGACCGACATGATCGCCTTATCCGGCGCCCACACGGTCGGCTTCTCCCACTGCACCCGCTTCGCCAACCGCCTCTACTCCTTCTCCCCGACCTCCCCGGTCGACCCGTCGCTCGACCCAGCCTACGCCAAACAGCTCATGAAAGCTTGCCCTAAGGACGTGGACCCCAGAGTTGCCGTGGACATGGACCCTGTGTCTCCACGGAAATTCGACAACGTTTATTACCAGAACCTCGTCAACCACAAGGGGCTTTTCACGTCGGATGAGGTGCTGTTCACGGACCCCTTGTCGCAGCCCACCGTCAGTGGCTTCGCCGGTGATCGGGCTGGGTTTAATAGAGCGTTTGCGGCGGCTATGGTTCGGCTTGGGAGAGTGGGCGTTAAGACTGGGGGTTTGGGTCAGATTAGAAAAGATTGCACTGCCTTTAATTAA 978 55.62 MAAMAMRVVLFLALVCVLMGLGEGQLWPNFYNSTCPNVEQIVRQAVSLKFSQTFVTVPATLRLFFHDCFVTGCDASVMIASASGDAEKDAEDNQSLAGDGFDTVIKAKQAVEAQCPGIVSCADIMALAARDVVVLAGGPSFSVELGRRDGLISNASLVAGKLPGPSFNLTQLNAMFAKNNLTQTDMIALSGAHTVGFSHCTRFANRLYSFSPTSPVDPSLDPAYAKQLMKACPKDVDPRVAVDMDPVSPRKFDNVYYQNLVNHKGLFTSDEVLFTDPLSQPTVSGFAGDRAGFNRAFAAAMVRLGRVGVKTGGLGQIRKDCTAFN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46667209 46669354 + Lag0030365.1 Lac8g2978 618812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2978 325 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 Pfam Peroxidase 42 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 Gene3D Peroxidase, domain 2 163 304 - -
Lac8g2978 325 FunFam Peroxidase 163 304 - -
Lac8g2978 325 PANTHER - 11 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 FunFam Peroxidase 29 170 - -
Lac8g2978 325 SUPERFAMILY Heme-dependent peroxidases 25 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 CDD secretory_peroxidase 25 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac8g2978 325 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lac8g2978 325 ProSiteProfiles Plant heme peroxidase family profile. 25 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 Gene3D - 29 325 - -
Lac8g2978 325 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2978 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac2g0680 Lac-Chr2:5100698 Lac8g2978 Lac-Chr8:46667209 7.80E-103 dispersed
Lac8g2978 Lac-Chr8:46667209 Lac8g2980 Lac-Chr8:46678010 1.50E-127 dispersed
Lac8g2978 Lac-Chr8:46667209 Lac8g2979 Lac-Chr8:46672343 1.30E-121 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2978 K00430 - csv:101213098 544.658