Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2979 ATGGAAGGGCGTTTTTGGAAGGGAGGAATAGTTTGGTTGGTTTTAATGGTGATTGTGGTTAAAAAAGGAGAAGGGCAGCTCCTGGAAAATTTTTATAGATCGAGTTGTCCAAACGTTGAACAAATAGTGAGACAAGCAGTTCAGAATAAGCTCTCTCAAACTATCATCACTATTCCTGCTACTTTGCGTCTCTTCTTTCACGACTGCTTTGTTGAGGGTTGCGATGCTTCAGTGATGATCTCATCGCCGAGCGGAAACGCCGAGAAGGACGCTCATGATAACCTCTCCCTCGCCGGAGACGGCTTCGACACCGTCGTCAAGGCCAAGCAGGCCGTCGAAGCCGCCTGCCCCGGCCGAGTCTCTTGCGCCGATATATTGGCCCTCGCCGCCCGAGACGCCGTCGTCCTCGCCGGAGGCCCAAATTTCAACGTCGAATTAGGACGTCGCGACGGCCTCATCTCCAAAGCCTCACGCGTCGACGGCAATTTACCGTCCCCAAATTTCGATCTGAACGCACTGACTTCCATCTTCGCCAGAAACGGACTCTCTCAAACCGACATGATCGCCCTCTCCGGCGCGCACACCATCGGCGCGTCCCACTGCAACCGCTTCGCCGACCGGCTCTTCTCCTCCTCCGGCGTAGATCCGTCGCTAAATCCGGCGTACGCAGAGCAACTGAAACAATCGTGCCCTCGGAATGTTGACCCAAGCGTGGTGGTGCAGCTGGATCCGACGACTCCGAACACGTTCGACAACGTGTATTACCGGAATTTGGTGGACGGCAAAGGGCTTTTCAGATCGGATGAGGTTCTGTTCACGAGCTCGGCGTCGAAGGCGACGGTGGTGGGATTTGCGAACAACGGAGGGCAGTTCAATGCGGCGTTTGTGGCGGCGATGAGGAAGCTGGGGAGAGTGGGAGTTAAGACGGGGAGCGCCGGAGAGATAAGGAGAGACTGTAGTGCGTTTAATTGA 972 55.14 MEGRFWKGGIVWLVLMVIVVKKGEGQLLENFYRSSCPNVEQIVRQAVQNKLSQTIITIPATLRLFFHDCFVEGCDASVMISSPSGNAEKDAHDNLSLAGDGFDTVVKAKQAVEAACPGRVSCADILALAARDAVVLAGGPNFNVELGRRDGLISKASRVDGNLPSPNFDLNALTSIFARNGLSQTDMIALSGAHTIGASHCNRFADRLFSSSGVDPSLNPAYAEQLKQSCPRNVDPSVVVQLDPTTPNTFDNVYYRNLVDGKGLFRSDEVLFTSSASKATVVGFANNGGQFNAAFVAAMRKLGRVGVKTGSAGEIRRDCSAFN 323
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 46672343 46674676 + Lag0030366.1 Lac8g2979 618813
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2979 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lac8g2979 323 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 FunFam Peroxidase 164 302 - -
Lac8g2979 323 SUPERFAMILY Heme-dependent peroxidases 26 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PANTHER - 12 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 Gene3D Peroxidase, domain 2 164 302 - -
Lac8g2979 323 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 Pfam Peroxidase 43 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 CDD secretory_peroxidase 26 322 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac8g2979 323 ProSiteProfiles Plant heme peroxidase family profile. 26 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2979 323 FunFam Peroxidase 30 174 - -
Lac8g2979 323 Gene3D - 30 323 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2979 Lac-Chr8:46672343 Lac8g2981 Lac-Chr8:46682092 1.80E-123 dispersed
Lac8g2978 Lac-Chr8:46667209 Lac8g2979 Lac-Chr8:46672343 1.30E-121 tandem
Lac8g2979 Lac-Chr8:46672343 Lac8g2980 Lac-Chr8:46678010 1.80E-128 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2979 K00430 - csv:101213343 536.184