Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2980 ATGGGATCTTTTTGGAGGGCTTTGGTTTTGGCTGTGGTTCTTGCAGCTTTGGTGGAGAGAAGAGAAGCTCAATTAGTAGAGAATTTCTACGCCTCAACTTGCCCAAACGTAGAGCAAATAGTTAGACAATCTGTTCAAAACAAGTTTGCTCAAACGTTCGTCACCATCCCTGCAACTTTGCGACTCTTCTTCCATGATTGTTTTGTTGAGGGATGTGATGCTTCTGTGATGATAGCATCTCCAAATGGGGACGCAGAGAAAGACGCTGAAGACAACATTTCATTAGCAGGAGATGGATTCGACACTGTTGTAAAAGCAAAACAAGCGGTAGAAAATGCTTGTCCTGGTCTTGTCTCTTGTGCAGACATCTTAGCTCTTGCAACTAGGGACGTCGTTAGCTTGGCCGGAGGCCCACAATACAGCGTGGAACTAGGCCGTCGAGATGGGCTCATTTCTCAAGCATCCCGAGTGGCCGGAAACCTACCGGAACCATTCTTCAACCTTAACCAACTGGTCACCATGTTCGCCTCCCACGGCCTGACCCTCATCGACATGATCGCCCTCTCCGGAGCGGGCCACACCCTCGGCTTCTCCCACTGCGACCGGTTCGCCAACCGGCTCTACTCCTTTTCGCCGTCGTCTCCGGTGGACCCGTCGTTGGACCCCGGGTACGCCCGACAGCTGATGGATGTGTGTCCGCAGAACGTGGATCCGAGCGTGGCCATCAACATGGATCCTATAACCCCTCAAACCTTCGACAACGTTTACTACCAGAACCTCGTCGCCGGCAAGGGGCTGTTCACTTCCGACCAAATTCTGTTCACGGAGTCACAATCGCAGCCGACGGTCCGCAGCTTCGCCACCAATGGGGCGGAGTTTAACGCGGCGTTTATCACGGCGATCACGAAGCTGGGTCGAGTGGGTGTTAAGACTGGTAGAGATGGTGAAATTCGAAGGGATTGCACTGCCTTTAATTCCTAA 981 52.29 MGSFWRALVLAVVLAALVERREAQLVENFYASTCPNVEQIVRQSVQNKFAQTFVTIPATLRLFFHDCFVEGCDASVMIASPNGDAEKDAEDNISLAGDGFDTVVKAKQAVENACPGLVSCADILALATRDVVSLAGGPQYSVELGRRDGLISQASRVAGNLPEPFFNLNQLVTMFASHGLTLIDMIALSGAGHTLGFSHCDRFANRLYSFSPSSPVDPSLDPGYARQLMDVCPQNVDPSVAINMDPITPQTFDNVYYQNLVAGKGLFTSDQILFTESQSQPTVRSFATNGAEFNAAFITAITKLGRVGVKTGRDGEIRRDCTAFNS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46678010 46679715 + Lag0030367.1 Lac8g2980 618814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2980 326 FunFam Peroxidase 28 168 - -
Lac8g2980 326 Gene3D Peroxidase, domain 2 162 304 - -
Lac8g2980 326 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 Gene3D - 28 325 - -
Lac8g2980 326 PANTHER - 10 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 FunFam Peroxidase 162 304 - -
Lac8g2980 326 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 Pfam Peroxidase 41 289 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2980 326 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2645 Lac-Chr1:47770754 Lac8g2980 Lac-Chr8:46678010 8.00E-116 dispersed
Lac5g2884 Lac-Chr5:47092470 Lac8g2980 Lac-Chr8:46678010 2.60E-71 dispersed
Lac8g2978 Lac-Chr8:46667209 Lac8g2980 Lac-Chr8:46678010 1.50E-127 dispersed
Lac8g2980 Lac-Chr8:46678010 Lac9g1086 Lac-Chr9:25580087 4.80E-113 dispersed
Lac8g2979 Lac-Chr8:46672343 Lac8g2980 Lac-Chr8:46678010 1.80E-128 tandem
Lac8g2980 Lac-Chr8:46678010 Lac8g2981 Lac-Chr8:46682092 9.00E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2980 K00430 - csv:101213580 557.37