Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g2981 ATGGGATTTCTTTGGCGGGCTTTGGTTTTTGCTGCGATTTTAGCGACGACGGTGGAGAGGGGAGAGGCCAAATTAGCAAAGAATTTTTATGCTCGAAGTTGCCCAAACGTGGAGCAAATAGTTAGACAATCTGTTCAAAAAAAGCTTTCTGAGACATTCGTTACTATCCCTGCAACTTTGAGACTCTTCTTCCATGACTGCTTTGTTGAGGGATGTGATGCTTCGGTGTTGATAGCGTCACCCAATGGGGATGCAGAGAAGGATGCTCCAGACAACATTTCATTAGCAGGAGATGGTTTTGACACTGTTATTAGAGCAAAACAAGCTGTTGAAGCTGTTTGCCCCGGTGTTGTCTCTTGTGCTGACATATTGACTCTCGCAACTAGGGATGTCGTTTTCTTGGCTGGAGGCCCACAATACAGCGTGGAACTGGGCCGCCGAGATGGGTTCATTTCCCAAGCATCCCGAGTCGCCGGAAACCTACCGGAGCCATTCTTCAATCTGAACCAACTGATCACCATGTTCGCCGCCCACAACCTGACACTCCTCGATATCATCGCCCTCTCCGGAGCCCACACCCTCGGCTTCTCCCACTGCGACCGCTTCTCCGACCGCCTCTACTCCTTTTCCCCGTCGTCTCCGGTGGACCCGTCGCTCGACCCGACTTACGCCCAACAGCTGATGCTGGCTTGTCCGCCGAACCCGCAGCCCGGCGTAATCGTGAACATGGATCCTGTGACCCCCAACACCTTCGACAACGTTTACTACCAGAACCTCGTCGCCGGCAAGGGCCTGTTCACCGCCGACCAGATTCTGTTCACCGAGTCGAGATCGCGGCCGACGGTCCTTAGATTTGCGAAGAATGGGGCGTGGTTTAATAAGGCGTTTATGAGGGCGATGACGAAGCTGGGTCGGGTCGGGGTTAAGACCGGCAGGAAGGGTGAAATTCGAAGGGATTGCACTGTCTTTAATCAGTAA 978 52.86 MGFLWRALVFAAILATTVERGEAKLAKNFYARSCPNVEQIVRQSVQKKLSETFVTIPATLRLFFHDCFVEGCDASVLIASPNGDAEKDAPDNISLAGDGFDTVIRAKQAVEAVCPGVVSCADILTLATRDVVFLAGGPQYSVELGRRDGFISQASRVAGNLPEPFFNLNQLITMFAAHNLTLLDIIALSGAHTLGFSHCDRFSDRLYSFSPSSPVDPSLDPTYAQQLMLACPPNPQPGVIVNMDPVTPNTFDNVYYQNLVAGKGLFTADQILFTESRSRPTVLRFAKNGAWFNKAFMRAMTKLGRVGVKTGRKGEIRRDCTVFNQ 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46682092 46685187 + Lag0030368.1 Lac8g2981 618815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g2981 325 FunFam Peroxidase 28 167 - -
Lac8g2981 325 Pfam Peroxidase 41 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 Gene3D - 28 324 - -
Lac8g2981 325 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lac8g2981 325 Gene3D Peroxidase, domain 2 162 303 - -
Lac8g2981 325 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 SUPERFAMILY Heme-dependent peroxidases 25 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PANTHER - 10 324 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 FunFam Peroxidase 162 303 - -
Lac8g2981 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Lac8g2981 325 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lac8g2981 325 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0924 Lac-Chr10:7361218 Lac8g2981 Lac-Chr8:46682092 5.30E-73 dispersed
Lac2g0521 Lac-Chr2:3899815 Lac8g2981 Lac-Chr8:46682092 1.30E-65 dispersed
Lac8g2979 Lac-Chr8:46672343 Lac8g2981 Lac-Chr8:46682092 1.80E-123 dispersed
Lac8g2981 Lac-Chr8:46682092 Lac9g1086 Lac-Chr9:25580087 9.40E-109 dispersed
Lac8g2980 Lac-Chr8:46678010 Lac8g2981 Lac-Chr8:46682092 9.00E-152 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g2981 K00430 - csv:101213580 516.924