Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g3004 ATGGCTCTACTGGAGATTTGCTTTGTTTTCATTGTCAGCAACCATTTTTCGTTTGTGTCTTCTGTGAATGAAGAGGGATTGGCTCTACTTTCCTTCAAAAACTCTACTTTTGATGCTGAAGGCTTTCTCCAAAACTGGAACTCCTCCGACGCGACCCCGTGTTCGTGGAATGGAATCAATTGCACAGAACAGAGAGTTGTCTCTCTCACTATTGCAGACAAGAAACTCTCTGGTACTCTCCATCCTGCACTTGGGAAACTTGTGTCACTCCGCCATTTGAGCCTTCGAAACAACAAGCTTTTTGGAAGCTTACCTGTTGAGCTCTACAATCTGGTAGAGTTACAAAGCTTAGACCTCTCACAAAACGTCTTCAATGGTTCTATTCCAGATGGGTTTGGTTCCCACTTGACATCTCTTCAGAATCTCAATCTTTCTTTCAATGTGATTGGCGGTTCGATCCCTGCAGACTTTGGCAACTTGTCCAACTTGCGAGCTACTCTCGATTTGTCTCACAATGTCTTTACCGGTCCAATCCCGCCGAGCCTGAGCAGCCTCCCTGCAAGCCTTTATATTGATCTCAGTTACAATAATCTCAGTGGCTCAATACCACCACAAGAAGCTTTCCAGAACCTCGGACCAACAGCTTACATAGGCAATGCCTTCATATGTGGACTTCCCCTCAATGTTTCATGCCCATCTATAGTGCCAACGTCAAACCCCGACTCGTGGTTCCATTGCCCATCACATGGGAAAGGTGGAAAATTTTGCTCCATGATCACAGTTTCAGCAAGTATCATAGTTGGTTTCTGCCTGGTTATCCTGGTAGTTTTTTGGTGCAAGAGAGCTTATCCTCCTAAAGCGAGTGAAACTCCAAATGGCTGCAACTTTAGAGAGGCATTGATGTTTAAAACAGAGCTTTCTTGCTTTGCAAGATATGAAGTTGAGCCCCTACCAGAAAACATGGAGAAGTATAACTTTGTGCTACTGGATCGGCAAGTCGACTTCGATCTCGAGCAACTTCTAAAAGCCTCAGCTTATCTTCTGGGCAAGAATGGGAATGGGATTGTGTATAAAGTGGTGCTAGAGAAAGGACTAATGCTAGCTGTAAGAAGATTGGAAGATGGAGCTTATGAAAGGTTTAAAGAGTTCCAAACTGAAGTTGAAGCAATTGGGAAAGTCAGACATCCCAATATTGTAGCTCTTTTAGCTTACTGCTGGTCTGTTGAAGAGAAGCTGCTCATACATGAATACATACCTGAGGGAGACCTTGCCACTGCAATTCATGGGAAAGCAGAAATTTCTTACTTCAAACCACTTTCTTGGGCTGATCGAGTGAAAATCATGAAAGGTATAGCAAAGGGATTGACATACCTTCACGAATTCAGTCCAAGAAAATACGTCCATGGCGATTTGAAGCCGACCAACATTCTTCTCGGCAACAACATGGAACCCTACATCTCAGATTTCGGACTCGGACGGCTTGCAAATGCGGCCGGAGATTTCACCGCCACACCATCGGAGACAAGCGCTGCCGCAACGCCGCGGCAGCAGAACTCTCCGTTCCGATCAAACTCCATGTGCTCGTCTCTGTCGATAGGGTCCTATTATCAAGCTCCCGAAGCGTTGAAGGCGGCAAAGCCATCGCAGAAGTGGGATGTTTACTCATTCGGAGTGATTTTACTAGAAATTATCACGGGAAAGTTGCCGGTGATTCAAGCGGGATCGTCGGAGATGGAGCTGGTTCAATGGATTCAACTTGGAATTGATGAAGGGAAACGGCCGTCGTGTATCATAGATCCGTCAATGGGTGAGCAAATGGAAAAGGAAGAAGCTGCGGCGGCCATTGAAATAGCAGTTGCTTGCACTCGGAAGAGCCCTGAGAAGAGACCTTGTATGAGAATTGTCTCTGAATGTCTGGAAAAATTGGCAACTTCATCGTAA 1941 45.54 MALLEICFVFIVSNHFSFVSSVNEEGLALLSFKNSTFDAEGFLQNWNSSDATPCSWNGINCTEQRVVSLTIADKKLSGTLHPALGKLVSLRHLSLRNNKLFGSLPVELYNLVELQSLDLSQNVFNGSIPDGFGSHLTSLQNLNLSFNVIGGSIPADFGNLSNLRATLDLSHNVFTGPIPPSLSSLPASLYIDLSYNNLSGSIPPQEAFQNLGPTAYIGNAFICGLPLNVSCPSIVPTSNPDSWFHCPSHGKGGKFCSMITVSASIIVGFCLVILVVFWCKRAYPPKASETPNGCNFREALMFKTELSCFARYEVEPLPENMEKYNFVLLDRQVDFDLEQLLKASAYLLGKNGNGIVYKVVLEKGLMLAVRRLEDGAYERFKEFQTEVEAIGKVRHPNIVALLAYCWSVEEKLLIHEYIPEGDLATAIHGKAEISYFKPLSWADRVKIMKGIAKGLTYLHEFSPRKYVHGDLKPTNILLGNNMEPYISDFGLGRLANAAGDFTATPSETSAAATPRQQNSPFRSNSMCSSLSIGSYYQAPEALKAAKPSQKWDVYSFGVILLEIITGKLPVIQAGSSEMELVQWIQLGIDEGKRPSCIIDPSMGEQMEKEEAAAAIEIAVACTRKSPEKRPCMRIVSECLEKLATSS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46880294 46882384 - Lag0030391.1 Lac8g3004 618838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g3004 646 SMART serkin_6 342 639 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g3004 646 MobiDBLite consensus disorder prediction 505 525 - -
Lac8g3004 646 Pfam Leucine Rich Repeat 89 111 IPR001611 GO:0005515(InterPro)
Lac8g3004 646 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Lac8g3004 646 Pfam Leucine Rich Repeat 114 134 IPR001611 GO:0005515(InterPro)
Lac8g3004 646 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515(InterPro)
Lac8g3004 646 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 14 130 IPR050647 -
Lac8g3004 646 Pfam Protein kinase domain 348 633 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac8g3004 646 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 22 166 - -
Lac8g3004 646 Gene3D Ribonuclease Inhibitor 25 137 IPR032675 -
Lac8g3004 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac8g3004 646 SMART LRR_typ_2 87 110 IPR003591 -
Lac8g3004 646 SMART LRR_typ_2 160 185 IPR003591 -
Lac8g3004 646 SMART LRR_typ_2 111 135 IPR003591 -
Lac8g3004 646 SMART LRR_typ_2 136 159 IPR003591 -
Lac8g3004 646 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Lac8g3004 646 SUPERFAMILY Protein kinase-like (PK-like) 347 640 IPR011009 -
Lac8g3004 646 Gene3D Phosphorylase Kinase; domain 1 315 417 - -
Lac8g3004 646 SUPERFAMILY L domain-like 24 227 - -
Lac8g3004 646 Gene3D Transferase(Phosphotransferase) domain 1 418 646 - -
Lac8g3004 646 Gene3D Ribonuclease Inhibitor 138 233 IPR032675 -
Lac8g3004 646 ProSiteProfiles Protein kinase domain profile. 342 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g1491 Lac-Chr8:32253089 Lac8g3004 Lac-Chr8:46880294 6.20E-129 dispersed
Lac8g3004 Lac-Chr8:46880294 Lac9g1306 Lac-Chr9:30224507 7.70E-62 dispersed
Lac8g3004 Lac-Chr8:46880294 Lac13g0530 Lac-Chr13:3875933 3.10E-135 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86411 PF00069 Pkinase 1.10E-34 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g3004 - - - 0.0