Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac8g3028 | ATGATTGGTCAACAGAGTATGAGCTCTTCATCAACACAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCGGTAGTCGACTAGATACGAGCATATCGCCTATTATAAAAGTGGACGACTGTGTGGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAACCAGCCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAATTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATACACAAGCTGCGTAGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCGCTGAACTCAGAAAGGCGTTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGTATGGAGAACATCGGCAGAGCGGTTTTTCCTCTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTACTTAAGCCATACTTTGAGCCATTAAACGAAGAACAACGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCTCTGTCACAGGGAATGGAGAAACTGCACCAGAATCTGTCCCTCAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATTCTAACCACCAAACAAGCAGCGCAAGGCTTGCTCGCTTTGGGTGAGTACTTCCATCGTCTTCGTGTTCTCAGTTCCCTCTGGGCGACTCGACCTCGCGAACCGGCCTAG | 1092 | 45.79 | MIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPADDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVAELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEEQRADIHKLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWATRPREPA | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 47066081 | 47068960 | + | Lag0030415.1 | Lac8g3028 | 618862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac8g3028 | 363 | SMART | brlzneu | 77 | 132 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g3028 | 363 | Pfam | Seed dormancy control | 167 | 242 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac8g3028 | 363 | ProSiteProfiles | DOG1 domain profile. | 150 | 358 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Lac8g3028 | 363 | Gene3D | - | 80 | 129 | - | - | |
Lac8g3028 | 363 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 79 | 123 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g3028 | 363 | FunFam | BZIP family transcription factor | 80 | 129 | - | - | |
Lac8g3028 | 363 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 7 | 362 | - | - | |
Lac8g3028 | 363 | SUPERFAMILY | Leucine zipper domain | 81 | 121 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g3028 | 363 | Coils | Coil | 249 | 269 | - | - | |
Lac8g3028 | 363 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 84 | 99 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g3028 | 363 | Pfam | bZIP transcription factor | 80 | 119 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac8g3028 | 363 | Coils | Coil | 161 | 181 | - | - | |
Lac8g3028 | 363 | Coils | Coil | 100 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac5g2020 | Lac-Chr5:38646574 | Lac8g3028 | Lac-Chr8:47066081 | 3.60E-101 | dispersed | |
Lac8g3028 | Lac-Chr8:47066081 | Lac9g2703 | Lac-Chr9:45307956 | 6.90E-76 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24374 | PF14144 | DOG1 | 9.30E-29 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac8g3028 | K14431 | - | csv:101217648 | 659.062 |