Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac8g3028 ATGATTGGTCAACAGAGTATGAGCTCTTCATCAACACAACTCTATGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGAAATGCCTTCGGTAGTCGACTAGATACGAGCATATCGCCTATTATAAAAGTGGACGACTGTGTGGACAATAAACCCGAGTTTATTCCTTTTGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAACCAGCCGATGATAAGGTACAAAGACGTTTAGCACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAATTGGAGCAGGAGCTAGAAAGAACCAAGCAGAAGGGTGTATACACAAGCTGCGTAGTAGATACCAGCCACTTGGGATTCGGCGGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGGTCGCTGAACTCAGAAAGGCGTTGCAAGTTCATATAACCGATATCGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCACAATCTGTTTTGCATGAAAGCAAATGCTGCAAAGGCTGATGTATTCTATTTAATGTCTGGAGTATGGAGAACATCGGCAGAGCGGTTTTTCCTCTGGATAGGAGGATTTCGCCCATCAGAGCTGCTAAACGTACTTAAGCCATACTTTGAGCCATTAAACGAAGAACAACGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCTCTGTCACAGGGAATGGAGAAACTGCACCAGAATCTGTCCCTCAGCATTGCCAATGATCCTCTAGGAAGCTATATTTCTCAGATGGGTGATGGGATGGAGAGACTAGAAGCATTGGAGAACTTTGTAAGCCAGGCAGACCATCTCAGGCAACAAACTTTGAAGAGAATGTCTCACATTCTAACCACCAAACAAGCAGCGCAAGGCTTGCTCGCTTTGGGTGAGTACTTCCATCGTCTTCGTGTTCTCAGTTCCCTCTGGGCGACTCGACCTCGCGAACCGGCCTAG 1092 45.79 MIGQQSMSSSSTQLYASRMGIYEPFHQINSWGNAFGSRLDTSISPIIKVDDCVDNKPEFIPFESMDHLESSQEMNKPADDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTSCVVDTSHLGFGGLVNPGIAAFEMEYNHWVEEQQRQVAELRKALQVHITDIELQILVESSLNHYHNLFCMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEEQRADIHKLQQSSRQAEDALSQGMEKLHQNLSLSIANDPLGSYISQMGDGMERLEALENFVSQADHLRQQTLKRMSHILTTKQAAQGLLALGEYFHRLRVLSSLWATRPREPA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47066081 47068960 + Lag0030415.1 Lac8g3028 618862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac8g3028 363 SMART brlzneu 77 132 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g3028 363 Pfam Seed dormancy control 167 242 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac8g3028 363 ProSiteProfiles DOG1 domain profile. 150 358 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Lac8g3028 363 Gene3D - 80 129 - -
Lac8g3028 363 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g3028 363 FunFam BZIP family transcription factor 80 129 - -
Lac8g3028 363 PANTHER TRANSCRIPTION FACTOR TGA9 7 362 - -
Lac8g3028 363 SUPERFAMILY Leucine zipper domain 81 121 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g3028 363 Coils Coil 249 269 - -
Lac8g3028 363 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g3028 363 Pfam bZIP transcription factor 80 119 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac8g3028 363 Coils Coil 161 181 - -
Lac8g3028 363 Coils Coil 100 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g2020 Lac-Chr5:38646574 Lac8g3028 Lac-Chr8:47066081 3.60E-101 dispersed
Lac8g3028 Lac-Chr8:47066081 Lac9g2703 Lac-Chr9:45307956 6.90E-76 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24374 PF14144 DOG1 9.30E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac8g3028 K14431 - csv:101217648 659.062