Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac8g3063 | ATGTTGGATCTACAAGAATTCTTATGGGGCTTTTCCATTCTCTCTCTGCTTCTCTGTTCTCTTCGTGGCTTGACCAAGGCCCTTCCCATGGCCGTCTCTCTCTATTCTCCTTCTTCCTCTGCCTTTCCCCCTCCTATCTCCTCCTGGGTTACGCATATTCTCCTCGGCACCAACCCTGGATCTCCCCTTCCTGACAATCCCTCTGCACCTTTCGATGCCCAACAAAATGCTCTCCCGCCAATCCTCCTCGACGCCCAGCCAGAACTGAAGAAGAGCGTTCGTGATCGTGACCCGAACTCGCGGGATGGCTCCGATTCTATAACAATGGCCAAGGGATCTGGGGCTCATAATAAGTTGAGGAAGAGGCCTGGAAAGCTCGTCGTGCCGGAGTATTGTCCTCAATTGGAATTTACGAAACTGAGGAAGAAAATGGAGAATCAGGAATTCCAAATCCAAGGCAGAGATTACTGTTTGGCGACCAAGAAGGGAAGACGAGAAACGCTGGAAGATGCCTATGGAGTCATGCTTGATATTTTCGGGGATTCCAAACAGGCTTTCTTCGCTGTAGTGGACGGCCATGGCGGTCGCGATGCAGCGGATTACGTGGTGGAAAATTTGGGGAAGAACATCGTAAACGCTCTTGAAAAAATTGCTGGAGATGAAGAAAACGCAATCGAATCGGCGATTCGCAGAGGTCACAGACGCACAGACGAGGAGTTTCTTAGTCAGGGCGTCGGCAGTGGAGCCTGTGCGGCGAGCGTGTTGGTGAAAGACGGCGAGCTTCATGTCGCCAACGTCGGAGATTGTCGAGTCGTATTGAGCAGAAACGGCGTAGCGACGCCATTGACGAAGCAACACCGTCTGTGTCGAGAAGACGAGCGCCTCCGGATTGAGAACTCGGGAGGGTTTGTGGACTGCAAAAATGGAGTGTGGAGAGTTCAGGGGTCGCTTGCGGTGTCGAGAGCCATTGGAGACCTACATTTGAAAGAATGGGTGATTTCAGAGCCTGAAATTCATCGTCTTCCTCTAACTCCCGATTGCGAGTTCTTGATAATGGCGTCTGATGGATTGTGGGACAAGGTAAGAGATCAGGAAGCAGTAGATGAAGTGATGAGGGAAATGGGAAGGAAGGAAGATACAATGAAGGCATGCAAAATGCTATTGGAAATGTCATTCAGAAGAGGGAACCTGGATGATGTTACAGTCATGGTGGTTTATCTTCATCACTTCATCATTTCCATTCAGTAA | 1248 | 50.0 | MLDLQEFLWGFSILSLLLCSLRGLTKALPMAVSLYSPSSSAFPPPISSWVTHILLGTNPGSPLPDNPSAPFDAQQNALPPILLDAQPELKKSVRDRDPNSRDGSDSITMAKGSGAHNKLRKRPGKLVVPEYCPQLEFTKLRKKMENQEFQIQGRDYCLATKKGRRETLEDAYGVMLDIFGDSKQAFFAVVDGHGGRDAADYVVENLGKNIVNALEKIAGDEENAIESAIRRGHRRTDEEFLSQGVGSGACAASVLVKDGELHVANVGDCRVVLSRNGVATPLTKQHRLCREDERLRIENSGGFVDCKNGVWRVQGSLAVSRAIGDLHLKEWVISEPEIHRLPLTPDCEFLIMASDGLWDKVRDQEAVDEVMREMGRKEDTMKACKMLLEMSFRRGNLDDVTVMVVYLHHFIISIQ | 415 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 47318245 | 47321196 | - | Lag0030450.1 | Lac8g3063 | 618897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac8g3063 | 415 | CDD | PP2Cc | 154 | 407 | IPR001932 | - | |
| Lac8g3063 | 415 | FunFam | Probable protein phosphatase 2C 74 | 152 | 410 | - | - | |
| Lac8g3063 | 415 | Pfam | Protein phosphatase 2C | 160 | 399 | IPR001932 | - | |
| Lac8g3063 | 415 | SMART | PP2C_4 | 147 | 405 | IPR001932 | - | |
| Lac8g3063 | 415 | SUPERFAMILY | PP2C-like | 153 | 408 | IPR036457 | - | |
| Lac8g3063 | 415 | ProSiteProfiles | PPM-type phosphatase domain profile. | 155 | 407 | IPR001932 | - | |
| Lac8g3063 | 415 | Gene3D | - | 151 | 410 | IPR036457 | - | |
| Lac8g3063 | 415 | PANTHER | PROTEIN PHOSPHATASE | 145 | 406 | IPR015655 | GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
| Lac8g3063 | 415 | MobiDBLite | consensus disorder prediction | 91 | 120 | - | - | |
| Lac8g3063 | 415 | SMART | PP2C_SIG_2 | 170 | 407 | IPR001932 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac4g2737 | Lac-Chr4:46274237 | Lac8g3063 | Lac-Chr8:47318245 | 1.70E-26 | dispersed | |
| Lac5g0081 | Lac-Chr5:679443 | Lac8g3063 | Lac-Chr8:47318245 | 8.70E-24 | dispersed | |
| Lac6g2864 | Lac-Chr6:46261533 | Lac8g3063 | Lac-Chr8:47318245 | 5.60E-36 | dispersed | |
| Lac7g2848 | Lac-Chr7:47619653 | Lac8g3063 | Lac-Chr8:47318245 | 1.10E-68 | dispersed | |
| Lac8g1754 | Lac-Chr8:35770777 | Lac8g3063 | Lac-Chr8:47318245 | 1.10E-38 | dispersed | |
| Lac8g2934 | Lac-Chr8:46361483 | Lac8g3063 | Lac-Chr8:47318245 | 1.80E-23 | dispersed | |
| Lac8g3063 | Lac-Chr8:47318245 | Lac9g1843 | Lac-Chr9:38204733 | 8.50E-22 | dispersed | |
| Lac8g3063 | Lac-Chr8:47318245 | Lac2g0725 | Lac-Chr2:5585682 | 3.80E-30 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac8g3063 | K17506 | - | rcu:8277160 | 433.335 |