Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0018 ATGGGGTTTGAGGAAATATTGATATTGATATGCAGTTCTAATCCTGGTATCGTTGAAAGAGGAATGGCAAAATACACCACCAACATGGGGGACATCAAAAAATTACCATCTATGGGGTTGATTGGTCATCTTAATGGTGACATTGGAGGCCTTACTGGACTCATAACATTGGACCTGTCATTTAATAAAAATCTCACTGGTCCACTCTCTCCTACGTTGGGGAATTTGCGAAACTTGAAGGCCCTAATCCTTGCTGCATGTGGCTTCAGTGGCCCTATTCCCCAAGAGTTGGGCAACCTTACTGAGTTGTTGTCCTTGGCCTTGAATGCAAACGAGCTCATTGGTCCTATACCATCTACTCTGGGAAAACTCTCCAGACTTTCATTGCTAGACTTGATGGATAATCAGTTGAGTGGACCTCTCCCTGTCTCACCAGGTCTCGACCATCTTCTTCAAGCAAAGCACTTTCACTTGAGCAAGAACAGGCTATCAGGCCCTATACCACACAATCTTTTTAGCTCTGCTATGAAATTAATACACATAGTATTTGATGAGAATCAGTTTTCTGGGAGTATTCCACCAACCTTGGGACTTGTTGAGAACCTTGAAGTTCTCCGACTTGATCGGAATAATCTAGCAGAACATGTCCCATCAAATCTTAGCAACTTAGGACGACTCCGTCAATTGAATTTAGCACACAATAATCTGACAGGTCCATTGCCAAATTTAACTCAAATGACTTCACTATGTGTTGTGGACCTTAGTAACAACTCTTTTGACCCATCAACAGCCCCAGATTGGTTCTCAAGCTTACCATCTCTTACCGCTTTGATCATTGAAACTGGGCCATTGCAAGGATCCGTCCCAGAAACAATCTTTAGCTTACCACAGATACAACAAATACAACTCAAGTACAATTTATTTAGTGGAACATTAAGCATGGGTGGCAACGTCAGTCCGCATCTGGAGCTTGTTGATTTGGAAAATAATCATATTACCCAACTTGCATTGTTTGGATATAACAAAACTTTGATGCTTAAAGGAAATCCTGCGTGTAACGTTGATCCTGTGTTAATAAAGGAAAATAATTGCCGACTTCCAATATCAGCTCCCAAGCCTGATTCTTCCAGTCCTGTCAGTGTCAAGTACTGTGAAACTAGCATATGCTCCAATCGCGAGAAGAATAACCCTCAGAGCTGTGAATGTCAATATCCATTTATAGGGTCTTTGTACTTCAGAGGACCCTCGATCAGAGAATTGTCTAATGTGACTCTGTTTCAGTTACTGAGAGAGAGCCTGTCAGTGAAACTACAGCTTCCTCTTGGTTCAGTTGTTATTCAAGATCCTGTGTTTGATACTGATGATTACCTTGGCATGACACTTGAACTTTTTCCACCCTTTGGAAAGCATTTCAGTCGGTCGGAAATTCTGAGGATTGCGTCTGCATTGAGTCATCAAACTTTCCTTCTTTCTGACGAGTTGGGATCATTTTTTTTCTATCCATCTCTGTACGAATTTTCAGCAGCAGATGTGGGAAATTTTAGTAGCAACAGGTGGGTTATTGGGATTGTAATCGGTGGTGCCTTACTGCTCCTGAGCCTCATTGGAGTTGGAATATATGCAATTAAGCAGAAGAAACGAGTATTGAAAGCGATTTCATCGAGCAAGCCATTTGCTTCCTGGTCATCGATTGAACAAGAAAGTGGAGACGCACCACAACTGAAGGGAGCAATATATTTTTCTTATGATGAGCTTAGAAAGTTGACAAATAATTTCTCCCAAAGTAATGAGATAGGAGTTGGAGGATATGGAAAGGTTTACAGAGGAATGACTGGGCATGGACGCCCATTCGCAATCAAAAGAGCTAAGCAAGGATCCAAGCAGGGTGCACTTGAGTTCAAGACTGAGATTGAATTGCTTTCACGAGTTCACCACAAGAATCTAGTCGGCCTTGTAGGATTCTGTTGTGAACAGGGAGAACAGATGCTTGTTTATGAATTCATGCCTAATGGATCACTTCGAGACACCTTTGGGAGTTCGTATATCCATCTTGGTTGGAAGAGAAGACTCCAAATAGCACTTGACTCTGCAAGAGGACTAGCTTACCTTCACGAGTTTGCAAATCCTCCTATAATCCATAGAGATATTAAGTCCTCCAATATTCTCTTGGATGAATATCTAAATGCGAAGGTAGCAGATTTTGGGCTGTCCAAGCTTGTATTTGACCATGAAAAGGGACATATTTCTTCCGGAGTCAAAGGCACGTGGGGTTATTTGGATCCAGAATATTATAAAACACAGCGGATAACGGAGAAGAGTGACGTATATAGCTTTGGAGTTGTTATGCTTGAACTGATTACGGCTAAGCTACCAATTGAGAAAGGAACATACTTAGCTCGTGAAGTGCTTAGGCTAGTGAACAAGAGTGACAAAACACATTACGGGTTGAGGAATATAATAGATGCAACCATTAGAAATGAGGTGACAAATCTAAGTGAGTTTGGACGGTTCTTGGAGTTGGCCATGAAATGTGTCGAAGAATCAGCTGCAAATCGCCCCATGATGAGTGAAGTGGTTAAAGAAATTGAGAGTATCTTACAAAATTTATCTTCACCGCCACCAAGTTTGCAACTTTGA 2637 41.56 MGFEEILILICSSNPGIVERGMAKYTTNMGDIKKLPSMGLIGHLNGDIGGLTGLITLDLSFNKNLTGPLSPTLGNLRNLKALILAACGFSGPIPQELGNLTELLSLALNANELIGPIPSTLGKLSRLSLLDLMDNQLSGPLPVSPGLDHLLQAKHFHLSKNRLSGPIPHNLFSSAMKLIHIVFDENQFSGSIPPTLGLVENLEVLRLDRNNLAEHVPSNLSNLGRLRQLNLAHNNLTGPLPNLTQMTSLCVVDLSNNSFDPSTAPDWFSSLPSLTALIIETGPLQGSVPETIFSLPQIQQIQLKYNLFSGTLSMGGNVSPHLELVDLENNHITQLALFGYNKTLMLKGNPACNVDPVLIKENNCRLPISAPKPDSSSPVSVKYCETSICSNREKNNPQSCECQYPFIGSLYFRGPSIRELSNVTLFQLLRESLSVKLQLPLGSVVIQDPVFDTDDYLGMTLELFPPFGKHFSRSEILRIASALSHQTFLLSDELGSFFFYPSLYEFSAADVGNFSSNRWVIGIVIGGALLLLSLIGVGIYAIKQKKRVLKAISSSKPFASWSSIEQESGDAPQLKGAIYFSYDELRKLTNNFSQSNEIGVGGYGKVYRGMTGHGRPFAIKRAKQGSKQGALEFKTEIELLSRVHHKNLVGLVGFCCEQGEQMLVYEFMPNGSLRDTFGSSYIHLGWKRRLQIALDSARGLAYLHEFANPPIIHRDIKSSNILLDEYLNAKVADFGLSKLVFDHEKGHISSGVKGTWGYLDPEYYKTQRITEKSDVYSFGVVMLELITAKLPIEKGTYLAREVLRLVNKSDKTHYGLRNIIDATIRNEVTNLSEFGRFLELAMKCVEESAANRPMMSEVVKEIESILQNLSSPPPSLQL 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 294240 310238 + Lag0007505.1 Lac9g0018 618944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0018 878 ProSiteProfiles Leucine-rich repeat profile. 225 247 IPR001611 GO:0005515(InterPro)
Lac9g0018 878 PANTHER RECEPTOR-LIKE PROTEIN 55 55 863 - -
Lac9g0018 878 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 70 145 - -
Lac9g0018 878 Gene3D Ribonuclease Inhibitor 243 366 IPR032675 -
Lac9g0018 878 FunFam Predicted protein 146 361 - -
Lac9g0018 878 CDD STKc_IRAK 598 865 - -
Lac9g0018 878 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 668 876 - -
Lac9g0018 878 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524(InterPro)
Lac9g0018 878 SUPERFAMILY L domain-like 37 345 - -
Lac9g0018 878 SMART serkin_6 592 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g0018 878 FunFam receptor-like protein kinase FERONIA 558 667 - -
Lac9g0018 878 Pfam Protein tyrosine and serine/threonine kinase 594 861 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g0018 878 ProSiteProfiles Protein kinase domain profile. 592 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g0018 878 Pfam Leucine Rich Repeat 225 242 IPR001611 GO:0005515(InterPro)
Lac9g0018 878 Pfam Leucine Rich Repeat 201 223 IPR001611 GO:0005515(InterPro)
Lac9g0018 878 SUPERFAMILY Protein kinase-like (PK-like) 573 862 IPR011009 -
Lac9g0018 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g0018 878 Gene3D Ribonuclease Inhibitor 145 242 IPR032675 -
Lac9g0018 878 Gene3D Phosphorylase Kinase; domain 1 563 667 - -
Lac9g0018 878 Gene3D Ribonuclease Inhibitor 24 144 IPR032675 -
Lac9g0018 878 Gene3D Transferase(Phosphotransferase) domain 1 668 872 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g2926 Lac-Chr7:48259264 Lac9g0018 Lac-Chr9:294240 2.00E-82 dispersed
Lac8g2771 Lac-Chr8:45024342 Lac9g0018 Lac-Chr9:294240 2.50E-61 dispersed
Lac9g0018 Lac-Chr9:294240 Lac9g2521 Lac-Chr9:43902846 5.70E-68 dispersed
Lac9g0018 Lac-Chr9:294240 Lac7g1602 Lac-Chr7:18816416 2.70E-211 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86413 PF07714 PK_Tyr_Ser-Thr 1.50E-44 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0018 - - - 0.0