Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0054 ATGCGAACGAAGAAGACGAAGACGAAGGCTCTGGTTTTGAAGGCTTGTTCGGATAAGACCAAGACGAAGTGGGTTTTGAAGGCTCGAGAAGGAAGTGTTGAGAGGGAAGATGAAGTGGTCGCTGGCGAGCTGTCGCCGGTCGTCGGCGAGTGGTGGTCGACAGTGACAGTGGCTGTCATTGCATTTGCAGCCTCAGAAGCCATGCCTGATATTAGAGGAGGCAAGAGATCTTCCTGTCTATTATTCTGTGAAGAAGGGGATACTCCCATGTCTTCAATGTTCTGTAGATGGAATCCTTTAAGACTGATCCTTCAGGGTCTGCTGTTGTCCTCATTATTGAGGTTGAATTTTGCATCCACGGATCCTGATGTGGAAGGAGAAGCTTTGGTAGACTTGTTAGGGGCACTAAATGATTCCAATCATCACATAACTGATTGGAATTATCATTTTGTTAGCCCTTGCTTTAGTTGGTCGCATATTGCCTGCCGAAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGCAGGATTTTCAGGATCACTTTCTCATTCAATTACCAAACTGAAATTTTTGGCCAGCCTGGATTTGCAGAATAATAATATAGCAGGTGTTCTACCAGATTATCTAGCTAACATGACCCACCTACAAAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTATACCTGCAGCTTGGGGTCAACTTGTTGGTCTAAAGCATCTGGATCTTTCAGATAACAACTTAACAGGAGAAGTTCCAGCACAATTCTTTTCAATTCCAATGTTCAACTTTTCAGGAACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCCTGTGTTTCGACTTCTCCCCATCGAGCTTCTGTAAAGAATTCAAAGTTTGGGGTAGTGGCAAGTACTGCAAGTTGTGGGGGATTCATACTTCTGTCAATTGGTGCCTTCTTCGCTTATAGATGCTTCTACATGCATAAGCTTAAGGATTCTAAGTTTGTTGATGTTGCTGGTGAAGATGAATGCAAACTTTGCTTTGGGCAAATCAGAAGATTTTCGTTGCGGGAAATTCAACTCGCTACCGATAACTTTAATGAAACAAACATTATTGGCCAAGGAGGCTTTGGAAAAGTTTATAAAGGCATCCTCTCAGATGCCTCCAAGGTGGCTGTGAAACGGTTAACAGACTACAATAGTCCTGGTGGGGAGGCTGCATTCCTAAGAGAAGTTCATTTAATAAGTGTTGCGGTGCATAGAAATCTTCTCCGGTTGATCGGATTCTGCACAACCACATCTGAGAGAATCCTTGTTTATCCATTCATGCAGAATCTCAGTGTAGCGCATCGCTTGAGAGATTTAAAACCTGGAGAAAGAAGCTTGGACTGGGCCACGAGGAAACGGATTGCTTTTGGTGCAGCACATGGTTTGGAGTACTTGCATGAGCATTGTAATCCTAAGATCATTCATCGTGATCTAAAGGCTGCAAATATCTTATTAGATGATGACTTTGAAGCTGTTCTTGGAGATTTTGGGCTGGCAAAGCTAGTTGATACTAAAGCGACTCATATTACTACTCAAGTCCGTGGTACAATGGGTCACATTGCCCCAGAATACTTGTCCACGGGAAAGTCGTCTGAAAAGACGGATGTTTTCGGATATGGTATAACTCTTCTTGAACTTGTCACTGGTCAGCGAGCAATAGATTTCTCCCGCCTCGAAGAGGAGGAAGACGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAGTAGGCTTGAAGATGTTGTGGACAAAAACTTAAAGAGCTACAACGAAAAGGAAGTCGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAAGTTCGCCAGAGGACCGGCCGACGATGGCGGAAGTTGTGAATCTACTACATGGAGAAGGGCTGGCAGATAGGTGGGCAGAGTGGATGCAGCTTGAAGAGGTAAGAGATCAGGAAGTGTCCCTCTTGTGTCACCAGTTTGTTTGGGGTGAAGAGTCAAGCCATGATCAAGAAGCCATTCAGTTGTCTAAAGCCAGATAG 2055 43.7 MRTKKTKTKALVLKACSDKTKTKWVLKAREGSVEREDEVVAGELSPVVGEWWSTVTVAVIAFAASEAMPDIRGGKRSSCLLFCEEGDTPMSSMFCRWNPLRLILQGLLLSSLLRLNFASTDPDVEGEALVDLLGALNDSNHHITDWNYHFVSPCFSWSHIACRNGNVISLSLGSAGFSGSLSHSITKLKFLASLDLQNNNIAGVLPDYLANMTHLQNLNLANNNFNGPIPAAWGQLVGLKHLDLSDNNLTGEVPAQFFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRASVKNSKFGVVASTASCGGFILLSIGAFFAYRCFYMHKLKDSKFVDVAGEDECKLCFGQIRRFSLREIQLATDNFNETNIIGQGGFGKVYKGILSDASKVAVKRLTDYNSPGGEAAFLREVHLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWATRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKATHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRESRLEDVVDKNLKSYNEKEVENIVQVALLCTQSSPEDRPTMAEVVNLLHGEGLADRWAEWMQLEEVRDQEVSLLCHQFVWGEESSHDQEAIQLSKAR 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 814507 822051 - Lag0007541.1 Lac9g0054 618980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0054 684 SUPERFAMILY Protein kinase-like (PK-like) 343 635 IPR011009 -
Lac9g0054 684 Pfam Leucine rich repeat 191 249 IPR001611 GO:0005515(InterPro)
Lac9g0054 684 SUPERFAMILY L domain-like 125 261 - -
Lac9g0054 684 Gene3D Transferase(Phosphotransferase) domain 1 439 655 - -
Lac9g0054 684 ProSiteProfiles Protein kinase domain profile. 362 648 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g0054 684 FunFam Somatic embryogenesis receptor kinase 1 331 438 - -
Lac9g0054 684 Pfam Leucine rich repeat N-terminal domain 125 162 IPR013210 -
Lac9g0054 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac9g0054 684 Gene3D Ribonuclease Inhibitor 122 282 IPR032675 -
Lac9g0054 684 Gene3D Phosphorylase Kinase; domain 1 331 438 - -
Lac9g0054 684 FunFam Somatic embryogenesis receptor-like kinase 1 439 655 - -
Lac9g0054 684 FunFam Leucine-rich repeat receptor-like kinase 124 235 - -
Lac9g0054 684 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524(InterPro)
Lac9g0054 684 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 108 683 - -
Lac9g0054 684 SMART serkin_6 362 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g0054 684 Pfam Protein tyrosine and serine/threonine kinase 366 634 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac5g1951 Lac-Chr5:37841768 Lac9g0054 Lac-Chr9:814507 3.20E-157 dispersed
Lac5g1952 Lac-Chr5:37865251 Lac9g0054 Lac-Chr9:814507 2.10E-157 dispersed
Lac8g2791 Lac-Chr8:45141079 Lac9g0054 Lac-Chr9:814507 7.60E-107 dispersed
Lac9g0054 Lac-Chr9:814507 Lac3g0903 Lac-Chr3:7322582 4.90E-67 dispersed
Lac9g0054 Lac-Chr9:814507 Lac2g2300 Lac-Chr2:31343464 4.80E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86414 PF00069 Pkinase 5.40E-45 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0054 - - - 0.0