Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0139 ATGGCGTCGCCGGTCGCAGCTTCTCCGTTGAAGCTTTACTCGTACTGGAGGAGCTCTTGTTCTCACCGTGTTCGAATTGCTCTGAACTTGAAAGGCTTAAATTTCGAATACAAAGCTGTTAACCTTCTCAAGGGAGAGCAATTCACTCCCGAATATGAAAAGCTCAATCCTATCGGTTATGTACCTACTCTCGTGGATGGAGATATTGTTATTGCGGACTCTTTTGCCATATTAATGTATTTGGAGGAGAAGTATCCTCAGAATCCTCTGTTGCCTCGTGATCTTGGTAAAAGAGCTGTTAATTATCAGGCTGCAAACATCGTTTCTTCTAGCATACAGCCTCTTCAAAATTTAGCTGTTCTGAAGTACGTTGAGGAAAAATCTGGTCCAGAGGAGAAACTTCGTTGGGTTCGACATCACATTGAAAAAGGTTTTACAGCAATTGAAAAGCTGCTAAAAGCTCATGCTGGAAAATTTGCTACTGGAGACGAAATATTTCTGGCAGACTTGTTTCTAGCTCCTCAAATTCATGGCGCCATTAATAGATTCAGTGTTGACATGTCCAAATTTCCACTTTTATCCAGGTTGAATGAGGAATACAATGCTATACCAGCATTTCAAGATGCAGCGCCTGCAAAGCAGCCTGATGCTCCTCAAAGCTCTACCTAA 669 42.15 MASPVAASPLKLYSYWRSSCSHRVRIALNLKGLNFEYKAVNLLKGEQFTPEYEKLNPIGYVPTLVDGDIVIADSFAILMYLEEKYPQNPLLPRDLGKRAVNYQAANIVSSSIQPLQNLAVLKYVEEKSGPEEKLRWVRHHIEKGFTAIEKLLKAHAGKFATGDEIFLADLFLAPQIHGAINRFSVDMSKFPLLSRLNEEYNAIPAFQDAAPAKQPDAPQSST 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2115364 2119176 + Lag0007626.1 Lac9g0139 619065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0139 222 PANTHER MALEYLACETOACETATE ISOMERASE 10 217 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Lac9g0139 222 SFLD Main (cytGST) 10 195 - -
Lac9g0139 222 NCBIfam maleylacetoacetate isomerase 11 217 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Lac9g0139 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 8 89 IPR004045 -
Lac9g0139 222 FunFam Maleylacetoacetate isomerase 93 220 - -
Lac9g0139 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 94 219 IPR010987 -
Lac9g0139 222 SUPERFAMILY Thioredoxin-like 5 93 IPR036249 -
Lac9g0139 222 FunFam Glutathione S-transferase Z1 8 92 - -
Lac9g0139 222 SFLD Glutathione Transferase (cytosolic) 10 195 IPR040079 -
Lac9g0139 222 CDD GST_N_Zeta 10 82 IPR034333 -
Lac9g0139 222 Pfam Glutathione S-transferase, C-terminal domain 121 205 IPR004046 -
Lac9g0139 222 CDD GST_C_Zeta 97 214 IPR034330 -
Lac9g0139 222 Gene3D Glutaredoxin 8 92 - -
Lac9g0139 222 SUPERFAMILY GST C-terminal domain-like 89 218 IPR036282 -
Lac9g0139 222 Gene3D - 93 220 - -
Lac9g0139 222 Pfam Glutathione S-transferase, N-terminal domain 8 82 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac7g0325 Lac-Chr7:2514038 Lac9g0139 Lac-Chr9:2115364 2.30E-69 dispersed
Lac9g0136 Lac-Chr9:2085487 Lac9g0139 Lac-Chr9:2115364 4.70E-90 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0139 K01800 - csv:101213302 383.259