Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0210 ATGGACGGGCAGACCTCGATCTCCAATGGCACAGACGATACAATCGTCTGTTATGCGCCAACGATGATCACGACAAATGGGGTGTGGCAAGGTGACAACCCTTTGGATTATTCTCTCCCTCTCTTTATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCGCTTTGGTTTACCTCTTAAAACCCTTTCGTCAACCTCGAGTCATCTCCGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCAGTACTGGGGAGGAATGCTAAATTTGCCAACACTGTATTTCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAACGTAGGGCTTCTCTACTTTCTATTCTTGGTTGGTGTGGAGATGGATCTCTCAGTAATTCGTCGAACTGGGAAGAAGGCAATGGCAATAGCTGTAGCAGGAATGATTCTTCCATTTGGAATAGGAGCTGCTTTTTCATTCCAGCTGCACAAGACTGGTGATCAAATCAACCAGAGCACTTACATTATGTTTCTTGGTATTGCGCTCTCTGTGACTGCTTTCCCAGTGCTTGCTAGAATTCTTGCAGAGCTTAAACTGATAAATTCAGAGCTTGGAAGGATGGCTATGGCTTCTGCTCTTTTTAATGATATGTGTGCTTGGGTTCTCTTAGCTTTAGCCATAGCCTTATCCGAGAATGATTCCTCATCTTTGGCTTCTTTATGGGTTGTATTGTCAAGTGCAAGCTTTGTTTTGTTTTGCATCTTCATCATTAGACCCATGATCTCGTGGATGATTCGAAGAACCCCGGAAGGAGAAAGTATCAGTGAGTTCTACATTTGTTTGATCCTCACAGGGGTTATGATCTCAGGGTTTGTTACAGATGCCATAGGGACACACTCGGTTTTTGGGGCATTTGTGTTTGGGTTGGTTATCCCAAATGGATCGCTTGGGGTGGCTTTGATTGAGAAACTTGAGGATTTTGTTTCAGGACTTTTGCTTCCTCTCTTCTTCGCAATAAGTGGGCTAAAGACTAATGTGGCTACCATAGACGGAATGCTATCTTGGATATCTATTTTATTTATCACTTTCCTTGCTTTTATTGGAAAAATCCTTGGAACTCTCCTTGCCGCCATTTGTTATCAGATGTCCTATCGCGAAGGCGTCACATTAGGCTTTCTTATGAACACCAAAGGTCTTATTGAAATGATCATCCTCAATGTCGGAAAGGACCAAAAGGTGTTAGATGATCAAACATTCACAGTTATGGTGATTGTGGCCCTCGTTATGACAGGGATAATAACACCTGCAGTCACCATAATCTATAGGCCAACAAGAAGGTTTCTACCATATAAGAAACGAACAATCCAAGCATCAAAACCAGATTCAGAGTTCAGAGTATTAGTTTGCATCCACACACCTCGAAATGTGCCAACAATCATCAACCTCCTTGATGCATCCCACCCGACCAAAAGATCTCCCATTTGCATTTATGTTTTACACTTGGTCGAACTCACAGGTCGAGCCTCCGCCATGCTCATTGTCCACAACACCAGAAAATCTGGCCGTCCTGCCCTGAATAGAACCCAAGCTCAATCAGATCACATCATCAATGCATTCGAGAACTACGAACAACACGTGGATTGTGTCTCTGTACAGCCTCTCACCGCCATTTCCCCCTACTCCACAATGCACGAAGACATCTGCAATTTAGCAGAGGACAAACGCGTTGCCTTCATAATCATCCCATTCCACAAGCAACAAACAGTCGATGGAGGAATGGAAGCCACAAATCCAGCATTTAGAATGGTCAACCAAAATGTGCTAGCCAATGCCCCTTGCTCTGTTGGAATCCTAGTCGATCGAGGTCTAAATGGCTCAAATCGAGCCGCATCCAACAAGGCATCTCACTATAACATAATCGTGCTGTTCTTCGGCGGACAAGACGACAGAGAAGCTCTATCATACGCATGGAGAATGTCAGAAAATCCAGGAGTGAGCTTAACCGTAATGCGATTCATCGCCGCAAAAGAAGTACTAGAACCAAAACCCGAAGCAAATGGACAAGGAGCTTCACCAATGGAAATAGAAATCGACAGAGAGAGGCAACTCGACGAAGAATACATAAATGAGTTTAGAGCAAAGAATGAAAACACGGAGTCAATTACTTACACAGAGAGAATCTTGAACAACGGCGAGGAGACAGTGGCGGCCATAAGATCGATGGACGATGCTCACGACCTGTTCATCGTGGGTAGAGGAGAAGCTCAGGTATCATCTCTCACCGCCGGGATGACAGACTGGAGCGAATGTCCAGAGCTCGGAGCAATCGGCGATCTGTTAGCTTCATCGGATTTTGCAGCGACGGCTTCAGTTTTGGTAGTGCAACAATTCGGAGCAGCAATGGCGGCTGAGCATGGAGAAGAAGAAGAAGAAAGTTCACCACGCAACCATGATCTAGGTGATCCCTACCAAGGCTTAAGATCCATGAACTTGAGGCAACATACTCCAACAAGAACTCAAATTATGTACAATACACAACATATTTAG 2526 44.5 MDGQTSISNGTDDTIVCYAPTMITTNGVWQGDNPLDYSLPLFILQLTMVVVMTRALVYLLKPFRQPRVISEILGGVILGPSVLGRNAKFANTVFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGKKAMAIAVAGMILPFGIGAAFSFQLHKTGDQINQSTYIMFLGIALSVTAFPVLARILAELKLINSELGRMAMASALFNDMCAWVLLALAIALSENDSSSLASLWVVLSSASFVLFCIFIIRPMISWMIRRTPEGESISEFYICLILTGVMISGFVTDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNVATIDGMLSWISILFITFLAFIGKILGTLLAAICYQMSYREGVTLGFLMNTKGLIEMIILNVGKDQKVLDDQTFTVMVIVALVMTGIITPAVTIIYRPTRRFLPYKKRTIQASKPDSEFRVLVCIHTPRNVPTIINLLDASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHVDCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRMVNQNVLANAPCSVGILVDRGLNGSNRAASNKASHYNIIVLFFGGQDDREALSYAWRMSENPGVSLTVMRFIAAKEVLEPKPEANGQGASPMEIEIDRERQLDEEYINEFRAKNENTESITYTERILNNGEETVAAIRSMDDAHDLFIVGRGEAQVSSLTAGMTDWSECPELGAIGDLLASSDFAATASVLVVQQFGAAMAAEHGEEEEESSPRNHDLGDPYQGLRSMNLRQHTPTRTQIMYNTQHI 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3239579 3242487 + Lag0007697.1 Lac9g0210 619136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0210 841 PANTHER CATION/H + ANTIPORTER 17 795 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Lac9g0210 841 Gene3D - 478 764 - -
Lac9g0210 841 MobiDBLite consensus disorder prediction 796 817 - -
Lac9g0210 841 Pfam Sodium/hydrogen exchanger family 53 431 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Lac9g0210 841 Gene3D - 41 439 IPR038770 -
Lac9g0210 841 FunFam Cation/H(+) antiporter 15 41 441 - -
Lac9g0210 841 MobiDBLite consensus disorder prediction 796 810 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0210 K26731 - - csv:101219265 1466.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2360 Lac-Chr11:39794310 Lac9g0210 Lac-Chr9:3239579 7.00E-94 dispersed
Lac13g1203 Lac-Chr13:10707807 Lac9g0210 Lac-Chr9:3239579 5.50E-130 dispersed
Lac1g0444 Lac-Chr1:9773591 Lac9g0210 Lac-Chr9:3239579 1.20E-198 dispersed
Lac4g2643 Lac-Chr4:45419195 Lac9g0210 Lac-Chr9:3239579 3.70E-90 dispersed
Lac5g2192 Lac-Chr5:40523238 Lac9g0210 Lac-Chr9:3239579 1.70E-204 dispersed
Lac5g2193 Lac-Chr5:40534211 Lac9g0210 Lac-Chr9:3239579 8.10E-202 dispersed
Lac7g2886 Lac-Chr7:47963075 Lac9g0210 Lac-Chr9:3239579 4.70E-69 dispersed
Lac8g0082 Lac-Chr8:1154807 Lac9g0210 Lac-Chr9:3239579 4.70E-138 dispersed
Lac8g0083 Lac-Chr8:1162010 Lac9g0210 Lac-Chr9:3239579 1.70E-135 dispersed
Lac8g2079 Lac-Chr8:39286898 Lac9g0210 Lac-Chr9:3239579 9.30E-126 dispersed
Lac8g2081 Lac-Chr8:39298083 Lac9g0210 Lac-Chr9:3239579 1.30E-114 dispersed
Lac9g0210 Lac-Chr9:3239579 Lac9g2349 Lac-Chr9:42755250 8.40E-101 dispersed
Lac9g0210 Lac-Chr9:3239579 Lac7g2881 Lac-Chr7:47919347 1.70E-125 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac9g0210 . 5 821 Antiporter Super Family AT2G13620 71.0 0.0e+00 1160.2
Lac5g2192 . 11 777 Antiporter Super Family AT1G64170 59.4 2.3e-244 842.8
Lac5g2193 . 19 802 Antiporter Super Family AT1G64170 57.0 9.8e-240 827.4
Lac5g2191 . 1 784 Antiporter Super Family AT1G64170 56.1 4.4e-232 802.0
Lac5g2192 . 1 794 Antiporter Super Family AT4G23700 66.3 4.4e-296 1014.6
Lac5g2193 . 21 794 Antiporter Super Family AT4G23700 65.3 6.3e-287 984.2
Lac5g2191 . 9 796 Antiporter Super Family AT4G23700 62.5 2.4e-278 955.7
Lac5g2191 . 1 780 Antiporter Super Family AT5G41610 69.7 6.9e-310 1060.4
Lac5g2192 . 1 774 Antiporter Super Family AT5G41610 69.2 1.1e-302 1036.6
Lac5g2193 . 13 804 Antiporter Super Family AT5G41610 66.9 6.4e-300 1027.3
Lac1g2021 . 8 812 Antiporter Super Family AT5G41610 52.0 2.3e-212 736.5
Lac5g2193 . 11 794 Antiporter Super Family AT3G17630 64.2 3.8e-276 948.3
Lac5g2192 . 2 772 Antiporter Super Family AT3G17630 64.7 1.2e-274 943.3
Lac5g2191 . 3 779 Antiporter Super Family AT3G17630 62.7 4.8e-271 931.4
Lac1g2021 . 2 816 Antiporter Super Family AT3G17630 51.7 1.2e-210 730.7
Lac1g2053 . 8 785 Antiporter Super Family AT3G17630 50.1 2.8e-186 649.8
Lac1g2021 . 75 834 Antiporter Super Family AT3G53720 68.8 2.0e-290 995.7
Lac1g2053 . 76 787 Antiporter Super Family AT3G53720 59.6 1.4e-232 803.5
Lac5g2191 . 83 780 Antiporter Super Family AT3G53720 51.1 1.6e-186 650.6
Lac5g2193 . 94 793 Antiporter Super Family AT3G53720 50.2 6.1e-183 638.6
Lac1g2011 . 54 492 Antiporter Super Family AT3G53720 60.1 3.9e-137 486.5
Lac4g2643 . 47 792 Antiporter Super Family AT3G52080 55.6 4.1e-238 822.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39