Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0227 ATGAATGCTCCACTTGAAACTAAATCCAACAAACCCTCCATTATCTTCCCCCTTTCCACGTTACCAAGATCTGCTTATCTCTTCATTTCAATGGCTTCCCTTCTCTTCCTCTCTCTTCTCACTCTCTTCCTCACTTTGCATCTCTCCTCCGCCGCCCACCACCACCACCCCTCCCCGGATTCATCCCTCCCACCGGAAATCGCCGTCGCCTGCACGGCCACCCGCTTCCCGGACCAATGCGGATCCTCCATTTCCCAATCCAACCGCCTCCCGCAAAATCCCACGCCGCTGCAGATAATCCAAGCCGCCGTCTGGGTCTCGTCGGAGAATCTCAAAACCGCCAAGTCCATGGTGAAGGCCATCCTCGACTCGTCGGCTGAGAGCCCCTACCTCAACCGCACCGCCGCCGCGGTAAGCTGTCTGGAGGCTCTGGGTTACTCGGAGTACCGAATTGGCCTCGTTAACGACGCCGTTCCGCTTGGTCGGATTAAGGACGCGCGCGCGTGGCTAAGCGCGTCGCTGCTCTACCAGACCGGTTGCCGGTCGGGGCTCAAGTACGTGAACGACACGCGCGAGGTGGATCAAACGATGTCGTTTCTCGACTACTTGACCGTGCTGTCGAGCAACGCGCTGAGCATGGCGGTGGCGTACGATATCTTCGGGAACGATACGGCGGAGTGGGGCCCGCCGAGAACAGAGCGGGATGGGTTCTGGGGGAAAACTGGGTCGGACGGATCATCGGCCGGGTCGGGTTTTGTGTTTCCGTTAAGGACGGCGGCGGACGCGACGGTGTGCAAGGACGGGAGCGAGGGGTGTTATGCGACGGTGCAGGCGGCGGTGGAGGCGGCGCCGGAGAATGCGGCGGCGAGGTTTGTGATACATATAAAGGAAGGGGTTTACGAGGAGATAGTGAGAGTGTCAGTGGAGAAGAAGAATTTGGTGTTTTTAGGAGATGGGATGGGCAAAACGGTAATTACGGGGTCCTTGAATGTGGGCCAGCCTGGAATTTCCACCTATAATTCGGCTACAGTCGGAGTTGTTGGCGACGGATTCATGGCTAGTGGCTTGACCATTGAAAACACAGCAGGTCCTGATGCCCACCAAGCTGTGGCCTTTAGATCAGACAGCGATCTCTCCATCATTCATGAGTGTGAGTTTATAGGCAACCAAGACACTCTCTACGCCCACTCCCTCCGCCAATTCTACAACTCCTGCCGCATCCTAGGCAATGTGGACTTCATCTTTGGCAACTCAGCCTCCTTCTTCCAAGACTGCCAAATCCTAGTCCGTCCTCGCCAACTCAACCCCCACGCTGGAGACGACAATGCCATCACCGCACACGGTAGGACCGACCCTGCACAGTCGACCGGGTTCGTGTTCCAGAATTGCCTCATAAATGGCACTGAGGAGTTCATGTCCTTGTACTATGCTAAGCCTCAAGCGCATAGGACCTTCTTGGGGCGCCCGTGGAAGGAGTATTCGAGGACAGTTTTTATACGGTGTGATCTCGAAGCTCTTGTTTCGCCCTCTGGGTGGATGCCATGGAGTGGGGATACTGGTTTGAAGACTCTATATTATGGGGAGTTTGAGAATTTTGGGATCGGTTCGGAGTTGTCGAAGAGAGTTGAGTGGAGTAGTCAAATCCCTGCAAATTATATTCTTAGTTACTCCGTTAAGAATTTCATTCAAGGAGACGAATGGATTCTATCATCTTCTTAA 1719 54.74 MNAPLETKSNKPSIIFPLSTLPRSAYLFISMASLLFLSLLTLFLTLHLSSAAHHHHPSPDSSLPPEIAVACTATRFPDQCGSSISQSNRLPQNPTPLQIIQAAVWVSSENLKTAKSMVKAILDSSAESPYLNRTAAAVSCLEALGYSEYRIGLVNDAVPLGRIKDARAWLSASLLYQTGCRSGLKYVNDTREVDQTMSFLDYLTVLSSNALSMAVAYDIFGNDTAEWGPPRTERDGFWGKTGSDGSSAGSGFVFPLRTAADATVCKDGSEGCYATVQAAVEAAPENAAARFVIHIKEGVYEEIVRVSVEKKNLVFLGDGMGKTVITGSLNVGQPGISTYNSATVGVVGDGFMASGLTIENTAGPDAHQAVAFRSDSDLSIIHECEFIGNQDTLYAHSLRQFYNSCRILGNVDFIFGNSASFFQDCQILVRPRQLNPHAGDDNAITAHGRTDPAQSTGFVFQNCLINGTEEFMSLYYAKPQAHRTFLGRPWKEYSRTVFIRCDLEALVSPSGWMPWSGDTGLKTLYYGEFENFGIGSELSKRVEWSSQIPANYILSYSVKNFIQGDEWILSSS 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3569689 3572339 + Lag0007714.1 Lac9g0227 619153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0227 572 Pfam Pectinesterase 261 565 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac9g0227 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 213 IPR035513 -
Lac9g0227 572 NCBIfam pectinesterase inhibitor domain 33 211 IPR006501 GO:0004857(InterPro)
Lac9g0227 572 PANTHER PECTINESTERASE 33 568 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac9g0227 572 FunFam Probable pectinesterase/pectinesterase inhibitor 51 65 216 - -
Lac9g0227 572 CDD PMEI-like_3 70 213 - -
Lac9g0227 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 65 216 IPR035513 -
Lac9g0227 572 SUPERFAMILY Pectin lyase-like 258 568 IPR011050 -
Lac9g0227 572 FunFam Pectinesterase 256 572 - -
Lac9g0227 572 SMART PMEI_2 62 213 IPR006501 GO:0004857(InterPro)
Lac9g0227 572 Gene3D - 256 572 IPR012334 -
Lac9g0227 572 Pfam Plant invertase/pectin methylesterase inhibitor 67 213 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g0227 Lac-Chr9:3569689 Lac9g0505 Lac-Chr9:9587043 3.40E-69 dispersed
Lac9g0227 Lac-Chr9:3569689 Lac9g0229 Lac-Chr9:3632111 7.40E-226 proximal
Lac3g2866 Lac-Chr3:45706899 Lac9g0227 Lac-Chr9:3569689 2.80E-71 wgd
Lac5g1410 Lac-Chr5:28299866 Lac9g0227 Lac-Chr9:3569689 9.50E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0227 - - - 0.0