Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0229 ATGGCCTCCCTCTCCTTCCTCTCTTTCCTCTCTCTCTTCTTCTTCCTCTCTCTCTCCTCCGCCTCACACCACCGTCATTCCCCCATCACCGCCTCCGCCACCGCGGGCATCCTCCACGCCTGTAAGGCCACCCGATTTACCGACCAATGCGGATCTTCCCTCTCTAACTCCTCTTCTCTCCCTCCCGATCCCACCCCTCTCCAGATCATCCACTCCGCCGTCGGCCTCTCATCAGACGCTCTCACCACGGCGCAGGTTATGGTCAAGGACATTCTCGACTCCTCGACCCACAATCTGAATCGGACCACTGCTGCCAAGAATTGCCTTGAGGTGCTCACGAATTCCGAGTACCGGATTTCCCTGACCAATGAGGCTCTCCGCCGAGGCCGGACCAAGGACGCGCGCGCGTGGATGAGCGCCTCGCTGCTCTACCATTACGATTGCTGGTCGGCTCTCAAGTACGCCAACGACACCCAGTTGGTCGACAAAACCATGGCGTTTCTCGACTCTCTCATCGGCCTCTCCAGCAACGCGCTCAGCATGGTCCTCGCCTACGACGTCTTCGGCAACGAGACCGCGTCCTGGACGCCGCCGAGGACCGAGCGCGATGGCTTCTGGGAGGGCGCCGCTGGAGGCGGATCTGGGTTGGGGTTCGCCGGTGGGTTCCCGTCGAAGCTGGCGGCGGATGCCACGGTCTGCAAGGACGGCGCCGACGGATGCTACAGAACCGTTCAGGAAGCCGTGGACGCGGCGCCGGAAAATGCGGCGGCGCGTAGGTTTGTGATTCACATTAAGGAAGGTGTTTACGAGGAAATCGTGAGGGTTCCGTTAGAGAAGAAGAATGTGGTGTTTTTGGGAGATGGGAAGGGCAAAACGGTAATTACGGGGTCACTGAATGTGGGCCAGCCTGGCCTTTCCACTTACAACACGGCTACCGTTGGAGTGGTTGGTGATGGATTCATGGCCAGTGGTCTTACTATTCAGAACACAGCAGGGCCTGATGTCCATCAAGCTGTGGCCTTCAGATCAGACAGTGATCTCTCTGTGATTCAAGACTGCGAGTTTATAGGCAACCAAGACACTCTCTACGCTCACTCCCTCAGACAGTTTTACAAATCCTGTCGGATTGAAGGCAATGTGGATTTCATCTTTGGAAACTCGGCTACCATCTTCCAGGACTGTGAGATCCTAGTCCGTCCCCGACAACTCAAGCCCGAGAAGGGCGAGAACAACGCCGTCACAGCTCAGGGCAGGACCGACCCCGCTCAATCGACCGGTTTCGTGTTCCAAAACTGCTTGATAAATGGCACTGAGGAGTACATGTCGTTGTACAACAGCAAGCCTAAAGTGCACAAGAACTTCTTGGGGAGGCCTTGGAAGGAGTACTCGAGGACGGTTTTCATACATTGTAATCTCGAGGCGCTTGTTTCGCCGCCCGGGTGGATGCCGTGGAGCGGGGATTTTGCTTTGAAAACTCTCTTCTATGGGGAGTTTGAGAATTCGGGGGCGGGGTCGAAGTCGTCCGAGCGCGTCGGCTGGAGTAGCCAGATCCCAGCCCAACATGTTTTTAGTTACTCTGTTGAGAATTTCATTCAGGGAGATGAATGGATTCCTTCATCTCAGTCCTCTGATGAACCCAAAATGTTGAACAGAGAAACCAAAAATGTGAATTGA 1674 55.62 MASLSFLSFLSLFFFLSLSSASHHRHSPITASATAGILHACKATRFTDQCGSSLSNSSSLPPDPTPLQIIHSAVGLSSDALTTAQVMVKDILDSSTHNLNRTTAAKNCLEVLTNSEYRISLTNEALRRGRTKDARAWMSASLLYHYDCWSALKYANDTQLVDKTMAFLDSLIGLSSNALSMVLAYDVFGNETASWTPPRTERDGFWEGAAGGGSGLGFAGGFPSKLAADATVCKDGADGCYRTVQEAVDAAPENAAARRFVIHIKEGVYEEIVRVPLEKKNVVFLGDGKGKTVITGSLNVGQPGLSTYNTATVGVVGDGFMASGLTIQNTAGPDVHQAVAFRSDSDLSVIQDCEFIGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNSATIFQDCEILVRPRQLKPEKGENNAVTAQGRTDPAQSTGFVFQNCLINGTEEYMSLYNSKPKVHKNFLGRPWKEYSRTVFIHCNLEALVSPPGWMPWSGDFALKTLFYGEFENSGAGSKSSERVGWSSQIPAQHVFSYSVENFIQGDEWIPSSQSSDEPKMLNRETKNVN 557
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3632111 3634042 + Lag0007716.1 Lac9g0229 619155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0229 557 CDD PMEI-like_3 40 186 - -
Lac9g0229 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 182 IPR035513 -
Lac9g0229 557 SMART PMEI_2 32 181 IPR006501 GO:0004857(InterPro)
Lac9g0229 557 Gene3D - 223 545 IPR012334 -
Lac9g0229 557 MobiDBLite consensus disorder prediction 537 557 - -
Lac9g0229 557 FunFam Probable pectinesterase/pectinesterase inhibitor 51 35 184 - -
Lac9g0229 557 Pfam Pectinesterase 229 534 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac9g0229 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 184 IPR035513 -
Lac9g0229 557 PANTHER PECTINESTERASE 9 539 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac9g0229 557 Pfam Plant invertase/pectin methylesterase inhibitor 39 181 IPR006501 GO:0004857(InterPro)
Lac9g0229 557 NCBIfam pectinesterase inhibitor domain 9 181 IPR006501 GO:0004857(InterPro)
Lac9g0229 557 SUPERFAMILY Pectin lyase-like 226 539 IPR011050 -
Lac9g0229 557 FunFam Pectinesterase 223 547 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g2163 Lac-Chr8:39965811 Lac9g0229 Lac-Chr9:3632111 2.50E-72 dispersed
Lac9g0229 Lac-Chr9:3632111 Lac9g0505 Lac-Chr9:9587043 2.40E-72 dispersed
Lac9g0227 Lac-Chr9:3569689 Lac9g0229 Lac-Chr9:3632111 7.40E-226 proximal
Lac5g2314 Lac-Chr5:41792956 Lac9g0229 Lac-Chr9:3632111 4.20E-42 transposed
Lac3g3013 Lac-Chr3:48196227 Lac9g0229 Lac-Chr9:3632111 5.10E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0229 - - - 0.0