Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g0272 | ATGGCCGATGCTGAGGATATCCAGCCACTTGTTTGCGATAATGGTACCGGAATGGTGAAGGCTGGATTTGCTGGTGATGATGCTCCCAGGGCAGTGTTTCCCAGTATTGTTGGTCGACCCCGACACACCGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCCCAATCCAAAAGAGGTATTCTTACCTTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTGCTTCTTACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAGACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTTCTATCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTGCTGGACTCTGGTGATGGTGTCAGTCACACTGTGCCAATCTATGAGGGTTATGCTCTACCCCATGCTATCCTTCGTCTGGACCTTGCTGGTCGTGATTTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTTGAGACTGCTAAGAGTAGCTCCTCATTGAGAAGAACTACGAACTGCCTGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATTCACGAGACTACCTACAACTCAATTATGAAGTGTGA | 861 | 46.69 | MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSLRRTTNCLMDKSSQLELRDSVARSSFPAIPHRNGSCWNSRDYLQLNYEV | 286 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4360476 | 4361568 | - | Lag0007759.1 | Lac9g0272 | 619198 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g0272 | 286 | SUPERFAMILY | Actin-like ATPase domain | 6 | 155 | IPR043129 | - | |
| Lac9g0272 | 286 | Gene3D | Actin; Chain A, domain 4 | 182 | 264 | - | - | |
| Lac9g0272 | 286 | CDD | NBD_sugar-kinase_HSP70_actin | 10 | 183 | - | - | |
| Lac9g0272 | 286 | ProSitePatterns | Actins and actin-related proteins signature. | 106 | 118 | IPR020902 | - | |
| Lac9g0272 | 286 | PRINTS | Actin signature | 117 | 130 | IPR004000 | - | |
| Lac9g0272 | 286 | PRINTS | Actin signature | 142 | 161 | IPR004000 | - | |
| Lac9g0272 | 286 | PRINTS | Actin signature | 28 | 37 | IPR004000 | - | |
| Lac9g0272 | 286 | PRINTS | Actin signature | 51 | 62 | IPR004000 | - | |
| Lac9g0272 | 286 | PRINTS | Actin signature | 63 | 85 | IPR004000 | - | |
| Lac9g0272 | 286 | SMART | actin_3 | 7 | 284 | IPR004000 | - | |
| Lac9g0272 | 286 | PANTHER | ACTIN | 8 | 247 | IPR004000 | - | |
| Lac9g0272 | 286 | SUPERFAMILY | Actin-like ATPase domain | 148 | 235 | IPR043129 | - | |
| Lac9g0272 | 286 | FunFam | Actin, alpha skeletal muscle | 36 | 73 | - | - | |
| Lac9g0272 | 286 | ProSitePatterns | Actins signature 1. | 55 | 65 | IPR004001 | - | |
| Lac9g0272 | 286 | Gene3D | - | 1 | 156 | - | - | |
| Lac9g0272 | 286 | Gene3D | Actin; Chain A, domain 2 | 34 | 74 | - | - | |
| Lac9g0272 | 286 | Pfam | Actin | 5 | 233 | IPR004000 | - | |
| Lac9g0272 | 286 | FunFam | Actin, alpha skeletal muscle | 3 | 152 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac1g2042 | Lac-Chr1:41970900 | Lac9g0272 | Lac-Chr9:4360476 | 8.70E-131 | dispersed | |
| Lac4g2649 | Lac-Chr4:45453040 | Lac9g0272 | Lac-Chr9:4360476 | 4.80E-22 | dispersed | |
| Lac8g2518 | Lac-Chr8:42999092 | Lac9g0272 | Lac-Chr9:4360476 | 9.90E-123 | dispersed | |
| Lac9g0272 | Lac-Chr9:4360476 | Lac9g2477 | Lac-Chr9:43622271 | 4.10E-116 | dispersed | |
| Lac9g0272 | Lac-Chr9:4360476 | Lac1g2407 | Lac-Chr1:45486567 | 1.80E-135 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g0272 | K10355 | - | csv:101215469 | 478.789 |