Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g0322 | ATGCAAGAGATGGTTGTCGACGCGGCGGATGAAGGTCGTTGGCACGGCGGAGATGGTTCGTCTGCGTGGGGTGTGGAATGCTCTCAAGGGTTTCTACTTTTGGAGGAAGAAGATGGACGGGTGGGCTGCTGCATGAAGGCTATTCTGGTGGTGAGGGTGGGCGGTGACATGACGTTTTTACCCATTGTATTTACGGGGGAGAAACGACCGAACATGCAAGAGATGGTTGTCGACGCGGCGGATGAAGGTCGTTGGCACGGCGGAGATGGTTCGTCGACGTGGTGTGAGAGACGTCGTTTACGTCATTTCCGAGGACATAGATGTGTTTTGCAGTATTTAATTGCAATTATTCATTCTGGTGGTGAGGGTGGGCGGGAAAATGGTGAGGATGATGTCAGCATCAAAGTCCTTTACTGTGGGGTTTGCCATTCTGATCTGCACTTGCTCAAGAATGATTGGGGTGTCACAAGTTATCCAATAGTCCCAGGGCATGAGATTGTTGGTGTAGTAACTTCTGTTGGGAATAATGTGAAGAAATTCAAAGCGGGCGACCAAGTTGGAGTCGGTGTCATAGTTGGATCTTGCAAAAGTTGTGAAAATTGTGAACAGGACTTGGAGAATTACTGCCCCAAGATGATATATACTTACAACTCACATTCATATGATGGAGCAAAGACTTACGGTGGTTATTCCGATAAGATCGTCGTCGATCAGCGTTTCGTGCTTCGATTTCCCGAAAACTTACCCCTTGATGCTGGAGCTCCACTTCTATGCGCTGGAATCACAATTTATAGCCCTATGAAATACTATGGAATGACTGAATCTGGTAAGCATTTGGGTGTGGTTGGACTTGGTGGGCTTGGTCATGTTGCTGTTAAGTTTGGCAAGGCATTTGGCTTGAAAGTTACTGTCATCAGTACCTCTCCAAGAAAGAAGGAGGAAGCTATCGATAGGCTCGGTGCCGACGCATTCCTTGTTTCGAGTGATCCTGCACAATTGAAGGCTTCCATGGGGACAATGGATTACATCATTGACACGGTATCAGCTATCCATGCTCTGGCTCCATTGCTTGGTCTGCTAAAACTCAATGGAAAGTTGGTCACTGTGGGTTTACCTAACAAGCCACTCGATCTGCCAATTGCTTCTCTAGTTATCGGTAGGAAGATGGTTGGTGGAAGCAACTTTGGAGGGCTGAAAGAGACACAAGAGATGTTGGATTTCTGTGCTAAACACAACATCACAGCAGAGATTGAGCTCATTCAGATGGACGACATTAACACGGCCATCGAAAGGCTTGCGAAAGCGGATGTTCGATATCGGTTTGTGATCGACATTGGAAACTCCTTGAAATAG | 1353 | 47.08 | MQEMVVDAADEGRWHGGDGSSAWGVECSQGFLLLEEEDGRVGCCMKAILVVRVGGDMTFLPIVFTGEKRPNMQEMVVDAADEGRWHGGDGSSTWCERRRLRHFRGHRCVLQYLIAIIHSGGEGGRENGEDDVSIKVLYCGVCHSDLHLLKNDWGVTSYPIVPGHEIVGVVTSVGNNVKKFKAGDQVGVGVIVGSCKSCENCEQDLENYCPKMIYTYNSHSYDGAKTYGGYSDKIVVDQRFVLRFPENLPLDAGAPLLCAGITIYSPMKYYGMTESGKHLGVVGLGGLGHVAVKFGKAFGLKVTVISTSPRKKEEAIDRLGADAFLVSSDPAQLKASMGTMDYIIDTVSAIHALAPLLGLLKLNGKLVTVGLPNKPLDLPIASLVIGRKMVGGSNFGGLKETQEMLDFCAKHNITAEIELIQMDDINTAIERLAKADVRYRFVIDIGNSLK | 450 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 5203641 | 5207092 | + | Lag0007809.1 | Lac9g0322 | 619248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g0322 | 450 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 248 | 413 | IPR036291 | - | |
| Lac9g0322 | 450 | CDD | CAD1 | 130 | 444 | IPR047109 | GO:0016616(InterPro) | |
| Lac9g0322 | 450 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 163 | 177 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Lac9g0322 | 450 | Gene3D | - | 125 | 445 | - | - | |
| Lac9g0322 | 450 | Pfam | Alcohol dehydrogenase GroES-like domain | 128 | 245 | IPR013154 | - | |
| Lac9g0322 | 450 | Gene3D | - | 259 | 415 | - | - | |
| Lac9g0322 | 450 | SUPERFAMILY | GroES-like | 126 | 277 | IPR011032 | - | |
| Lac9g0322 | 450 | Pfam | Zinc-binding dehydrogenase | 286 | 409 | IPR013149 | - | |
| Lac9g0322 | 450 | FunFam | probable cinnamyl alcohol dehydrogenase | 122 | 267 | - | - | |
| Lac9g0322 | 450 | FunFam | Cinnamyl alcohol dehydrogenase | 259 | 415 | - | - | |
| Lac9g0322 | 450 | PANTHER | ALDEHYDE REDUCTASE | 125 | 448 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER) | |
| Lac9g0322 | 450 | SMART | PKS_ER_names_mod | 120 | 443 | IPR020843 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac5g2574 | Lac-Chr5:44271303 | Lac9g0322 | Lac-Chr9:5203641 | 8.40E-100 | dispersed | |
| Lac9g0322 | Lac-Chr9:5203641 | Lac6g2362 | Lac-Chr6:41349760 | 1.40E-46 | dispersed | |
| Lac9g0319 | Lac-Chr9:5156493 | Lac9g0322 | Lac-Chr9:5203641 | 1.80E-138 | proximal | |
| Lac11g1844 | Lac-Chr11:33161640 | Lac9g0322 | Lac-Chr9:5203641 | 4.50E-96 | transposed | |
| Lac1g0041 | Lac-Chr1:818356 | Lac9g0322 | Lac-Chr9:5203641 | 3.50E-15 | transposed | |
| Lac1g1641 | Lac-Chr1:37671286 | Lac9g0322 | Lac-Chr9:5203641 | 1.30E-47 | transposed | |
| Lac1g2761 | Lac-Chr1:48760825 | Lac9g0322 | Lac-Chr9:5203641 | 1.40E-129 | transposed | |
| Lac2g0127 | Lac-Chr2:960842 | Lac9g0322 | Lac-Chr9:5203641 | 9.70E-115 | transposed | |
| Lac2g2801 | Lac-Chr2:43756208 | Lac9g0322 | Lac-Chr9:5203641 | 1.40E-22 | transposed | |
| Lac5g1150 | Lac-Chr5:19933018 | Lac9g0322 | Lac-Chr9:5203641 | 1.20E-29 | wgd | |
| Lac6g1547 | Lac-Chr6:20220823 | Lac9g0322 | Lac-Chr9:5203641 | 2.30E-18 | wgd | |
| Lac7g2193 | Lac-Chr7:36087021 | Lac9g0322 | Lac-Chr9:5203641 | 1.80E-18 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g0322 | K00083 | - | csv:101206562 | 548.895 |