Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g0389 | ATGGACCTGGGTTTGGTTACGTCAAAAGACAACACCTGGTGGGTCTTTACACTTCCTTATCTTCTTGGTTCGGAAAACCTTGATTCTTGTCTCATTCTTCTCTTGGGTTTTCTTTCTCTTGCCCTTCTTTCTTGGGCTTTTGCCGTCGGTGGCACTGCTTGGACCAATGGAAGGAATGAAAGAGGTCGAGTTCCCATTCCCGGCCCTCGCGCCCTTCCAATTCTCGGCAGTTTGTTCACTCTCAGTCGTGGCTTACCCCACCGGACTCTCGCTGCCATGGCAGCTGCCCGAGGTAACTCTAAGCTAATGGCCTTCAGTCTCGGCTCCACCCCTGTTGTCGTGGCTTCCGACCCTAATACGGCCAAGGAAATTTTAACCTCGCCCCACTTCGCCGACCGCCCTTTAAAGCAGTCAGCCAAAAGCCTGATGTTCGGTCGAGCCATAGGGTTCGCACCAAACGGCACCTACTGGCGCCTCCTCAGAAGAATCGCCTCTTCACACCTCTTCTCTCCAAGGCGTATTGCAGCCCACGAAGGCGCCCGCCAGCTCGAATGTGCCGCTATGCTACAAAGCATTCACAACGACCAAACCCTCCACGGAACCGTTTCTCTGAGGAAGCACCTTCAAGCAGCCGCCTTGAACAACATCATGTGGAGCGTCTTCGGGAAGCGCTTCGACCCGGACGACTCCAAGTTAGAAGCGCTTCGAGATTTGGTCCGAGAAGGGTTCGAGCTTTTGGGTGCCTTCAACTGGTCCGATCATCTTCCATGGCTTAGTTGGTTCTACGACCCATGTCGTATTAACCAGCGCTGCGCCAAACTCGTCCCCAAAGTTACCAAATTCGTCGGAGACGTAATTAATGAGCACCGTCGGCCTAAAACCCTGTCGGATGATTCCGATTTTGTTGACGTTTTGCTCTCTCTCGATGGCGACGAAAAGCTCAACGATGATGACATGGTCGCTGTTTTATGGGAAATGATTTTCAGAGGGACGGATACGACAGCGCTGCTTACAGAGTGGGTGATGGCGGAGTTAGTTTTGCAGCGTGAGGTACAGGAAGAAGTTGGGAGGGAAATCGAGAGGGCTGTGGGCGGTGACGGAAGAACCCTCACAGACGCCGACGTGGCTAACCTGCCTTACTTACAGGCGGTGGTGAAGGAGACACTGCGGCTGCACCCACCGGGTCCACTTCTCTCGTGGGCCCGCCTCTCTTCGTCGGACGTCCAGCTCAGCAACGGCATGCTTATCCCTGAGAACACAACCGCCATGGTCAATATGTGGGCCATCACACACGATCCGCACGTATGGGAGGATCCACACGTGTTCAACCCGGGCAGGTTCATGGGCGCCGACGTGGACGTGAGGGGCAGCGACCTCCGCCTGGCGCCCTTTGGGGCTGGACGGAGGGTCTGCCCGGGAAAGAACCTCGGCCTTGTCACTGTCACGCTTTGGGTCGCTAAGCTGGTCCATCACTTCAAATGGGCCCCCGACCCGGCCCACCCTGTGGACCTCACCGAACTCCTCAAGCTCTCCTGCGAGATGAAGAATCCTCTACGTGCAGTCGCAGTGCAAAGACGTGGACTTTAG | 1587 | 55.64 | MDLGLVTSKDNTWWVFTLPYLLGSENLDSCLILLLGFLSLALLSWAFAVGGTAWTNGRNERGRVPIPGPRALPILGSLFTLSRGLPHRTLAAMAAARGNSKLMAFSLGSTPVVVASDPNTAKEILTSPHFADRPLKQSAKSLMFGRAIGFAPNGTYWRLLRRIASSHLFSPRRIAAHEGARQLECAAMLQSIHNDQTLHGTVSLRKHLQAAALNNIMWSVFGKRFDPDDSKLEALRDLVREGFELLGAFNWSDHLPWLSWFYDPCRINQRCAKLVPKVTKFVGDVINEHRRPKTLSDDSDFVDVLLSLDGDEKLNDDDMVAVLWEMIFRGTDTTALLTEWVMAELVLQREVQEEVGREIERAVGGDGRTLTDADVANLPYLQAVVKETLRLHPPGPLLSWARLSSSDVQLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFMGADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWAPDPAHPVDLTELLKLSCEMKNPLRAVAVQRRGL | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 6960956 | 6962632 | - | Lag0007876.1 | Lac9g0389 | 619315 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g0389 | 528 | Gene3D | Cytochrome P450 | 57 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 338 | 364 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 96 | 115 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 461 | 471 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 471 | 494 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 382 | 400 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 425 | 449 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 318 | 335 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | E-class P450 group I signature | 211 | 229 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PANTHER | CYTOCHROME P450 78A7-RELATED | 5 | 521 | IPR051996 | - | |
| Lac9g0389 | 528 | SUPERFAMILY | Cytochrome P450 | 66 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 464 | 473 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac9g0389 | 528 | PRINTS | P450 superfamily signature | 329 | 346 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | P450 superfamily signature | 462 | 471 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | P450 superfamily signature | 471 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | PRINTS | P450 superfamily signature | 383 | 394 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | FunFam | Cytochrome P450 78A5 | 58 | 525 | - | - | |
| Lac9g0389 | 528 | Pfam | Cytochrome P450 | 67 | 502 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac9g0389 | 528 | CDD | CYP78 | 98 | 518 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac6g0806 | Lac-Chr6:6920298 | Lac9g0389 | Lac-Chr9:6960956 | 2.80E-134 | dispersed | |
| Lac9g0389 | Lac-Chr9:6960956 | Lac1g2875 | Lac-Chr1:49697848 | 2.40E-69 | dispersed | |
| Lac11g1324 | Lac-Chr11:21058298 | Lac9g0389 | Lac-Chr9:6960956 | 1.30E-51 | wgd | |
| Lac12g1270 | Lac-Chr12:18458668 | Lac9g0389 | Lac-Chr9:6960956 | 6.60E-136 | wgd | |
| Lac9g0389 | Lac-Chr9:6960956 | Lac9g1463 | Lac-Chr9:32910459 | 1.90E-39 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g0389 | K20619 | - | csv:101214099 | 842.417 |