Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0429 ATGGGTTCTAAATCCCAAGTCCTATTGAACCCACAAGGTTTGTTTGAAGATCAAGCGCCCTCATCAGAAGCAGCAGCAGCAGCTCATTCTCAAATGGGATTCTTCTCTTTCCCTTCTTCAAACTTAACCTTTTTTCAACTTCCTTCAATGCCCCAAACCCATTCTTCTTCTTCTTCCCCTCCATTTGAGCCTCCCAATTTCTCCACTACTTCCAATATCAATAATATCAATAATAATAATAATAATACCCTCTCTGAAACCCTACTTTCTTCTTCTCTTTTGCCCCTCAAGCCTTCACTTCTCTCCCCTTCCTCTCACTTTGCACCTCAACACCTCCTCTCCTTGCAAACTTCCTCTCCAAATCTATGGCCATGGGGAGAGGTTGGAGAGAGATTGATGAGTGGGAAGAGAAATGAGTATCAATTGGGAGTGTCAACAATGAAGATGAAGAAGATGAAGGGAAGAAGAAAGGTGAGAGAGCCAAGGTTCTCATTCAAGACCATGAGCGATGTGGATGTTCTTGATGATGGTTACAAATGGCGAAAGTACGGACAGAAAGTGGTCAAAAACACACAGCATCCTAGAAGCTACTATCGTTGTACACAAGATCACTGTAGGGTAAAGAAACGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGAAGACACATTCATTCTCCTTCTCATGATTCTGAAGACTCTGAATCTCAAACCCATCTCAACAATTTCTTTTGCTTTGGTTCTTTTGCCCATCTCTCTTCTCTTCCCTTCTTGTGTGTTGGTAATGTAAGGGAAAGAGATGGAAATGAACCTTAG 834 41.85 MGSKSQVLLNPQGLFEDQAPSSEAAAAAHSQMGFFSFPSSNLTFFQLPSMPQTHSSSSSPPFEPPNFSTTSNINNINNNNNNTLSETLLSSSLLPLKPSLLSPSSHFAPQHLLSLQTSSPNLWPWGEVGERLMSGKRNEYQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDSEDSESQTHLNNFFCFGSFAHLSSLPFLCVGNVRERDGNEP 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8038047 8040049 - Lag0007916.1 Lac9g0429 619355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0429 277 Pfam WRKY DNA -binding domain 175 231 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g0429 277 ProSiteProfiles WRKY domain profile. 169 234 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g0429 277 Gene3D WRKY domain 161 227 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g0429 277 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 92 239 IPR044810 GO:0003700(InterPro)
Lac9g0429 277 SMART WRKY_cls 174 233 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac9g0429 277 FunFam WRKY transcription factor 57 160 234 - -
Lac9g0429 277 SUPERFAMILY WRKY DNA-binding domain 166 233 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac8g0090 Lac-Chr8:1267928 Lac9g0429 Lac-Chr9:8038047 1.10E-28 dispersed
Lac9g0429 Lac-Chr9:8038047 Lac9g2256 Lac-Chr9:41926862 4.60E-24 dispersed
Lac1g2434 Lac-Chr1:45817192 Lac9g0429 Lac-Chr9:8038047 5.50E-48 transposed
Lac7g0034 Lac-Chr7:284013 Lac9g0429 Lac-Chr9:8038047 1.30E-37 transposed
Lac9g1136 Lac-Chr9:26643106 Lac9g0429 Lac-Chr9:8038047 5.30E-34 transposed
Lac5g0656 Lac-Chr5:8070200 Lac9g0429 Lac-Chr9:8038047 6.60E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24385 PF03106 WRKY 4.60E-24 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0429 - - - 0.0