Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0505 ATGGCTTCTTCAAACTCCATTCCTCCTCTCACAATCCTCACCCTCCTCCTCTTCCTATTCTCCTCCTCATCCTCTGCCGTTCCCGTCCCCGGTCCCGTCCCGACCGAGGAGATTTGCCGATCCACAACCTCGCCATTCTTCTGCAAATCCTTCCTCCCCAACTCCCCGGCCACCGTCCACTCCCATTGCCGATACACTCTCCGCCACGCCCTCGTCCACGCACGCACCTTCCTCGCCCTCGTCGACACGCACATCACCCTCTTCCCCTTCCTCTCCGCGCTCCAGGACTGCCGGTCCCTCGCGGCGGCCAACCTCGACTTTATATCCAACAGCTTCCACACAGTCAACACGACCAGCCAGGCCCTTCCGTTCTATCAAGCCGATGAGATGCTGAGCTTGCTGAGCGCTGTGATCACGAATGAAGACACTTGTTACGAAGGGCTGGTGGGCTTGGGCGTGGGCTTGGGCTTGGTTGATAAGGTGTTGAAGGCCATCTCGTTCGATAGAAAGCTTTACAGTTTGTACCTTTCTTTGTTCAAATTGGGTTGGGTTTCTGATGACGTCAAGGCTCCTGAGTTGCCAAAGACGAACCGTTTTGGGCTCGGGAATGGGGCCTTGAAGCTCAAGATGTCGCCCAAAGACCGTGCGTATTACGAGCGGTTGGTGCATAGGAAAAAGCCGGCGGCTCGAAGGCTTCTTCAAACCAATAATTATGAAAATGATGGAATTGTAATCAATGGTATTGTTGGGGTGGATCAAAATGGAACCTACGATTTCACCACAATCAACGCGGCCATTGCGGCAGCGCCGAACAACTCCGTCGCCGCCAAAGGATACTATCTGATCTTCGTGACTGCCGGGATCTACAACGAGACCGTGTTGGTTCCCAAAAACAAAAAGTACATTTTGATGATTGGAGAAGGTAACAATCAGACCATCATCACCGGCAACAAGAACGTTGTCGATGGCTCCACCACTTTCAACAGTGCAACCGTCGCTGTGGAGGGAGCAGGATTCTTTGGAGTGAACCTCACGATCACCAACACGGCGGGCGCTGCCAAACACCAAGCCGTGGCGCTACGAGTGAGCGCCGACATGACGACATTCTACACTTGCATATTCGAAGGCTACCAAGACACTCTATACACCCACTCCCTCCGCCAGTTCTACAGAGAGTGCGACATCTACGGAACCGTCGACTTCATATTCGGCAATGCCGCCGTCGTCTTCCAAACCTGCAACATCTACGCGCGGCTGCCGCTGAGCGGCCAGTTCAACGCCCTCACGGCGCAAGGCCGAACCGACCCGAATCAAAACACCGGCACCTCCATCCACAACTGCACCCTTAAGCCGACAGCCGAGCTCGCAGCTAGCCCGACCACCAAGAGCTACTTGGGGCGGCCGTGGAAGCAATATTCTCGAACGGTTTACATGCAGTCGTTTATCGACGCGTTTATTGACCCTGCAGGGTGGAAGGAATGGGATGGGACTTTGAATTTGAACACATCGTATTATGCGGAGTTTAATAACTCAGGGCCGGGATCCGACACTTCGCACCGGGTTCAATGGGCGGTTGGCGCGATCAACGCCACCGTGGCTAACAACTTCACGGTGTCGAACTTCTTGGCGGGAGATCAATGGCTGCCGCCGACCACCGTGCCGTACACCGGCAGTTTGATATCGTAA 1686 54.69 MASSNSIPPLTILTLLLFLFSSSSSAVPVPGPVPTEEICRSTTSPFFCKSFLPNSPATVHSHCRYTLRHALVHARTFLALVDTHITLFPFLSALQDCRSLAAANLDFISNSFHTVNTTSQALPFYQADEMLSLLSAVITNEDTCYEGLVGLGVGLGLVDKVLKAISFDRKLYSLYLSLFKLGWVSDDVKAPELPKTNRFGLGNGALKLKMSPKDRAYYERLVHRKKPAARRLLQTNNYENDGIVINGIVGVDQNGTYDFTTINAAIAAAPNNSVAAKGYYLIFVTAGIYNETVLVPKNKKYILMIGEGNNQTIITGNKNVVDGSTTFNSATVAVEGAGFFGVNLTITNTAGAAKHQAVALRVSADMTTFYTCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQTCNIYARLPLSGQFNALTAQGRTDPNQNTGTSIHNCTLKPTAELAASPTTKSYLGRPWKQYSRTVYMQSFIDAFIDPAGWKEWDGTLNLNTSYYAEFNNSGPGSDTSHRVQWAVGAINATVANNFTVSNFLAGDQWLPPTTVPYTGSLIS 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9587043 9591001 + Lag0007992.1 Lac9g0505 619431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0505 561 SMART PMEI_2 30 178 IPR006501 GO:0004857(InterPro)
Lac9g0505 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 181 IPR035513 -
Lac9g0505 561 SUPERFAMILY Pectin lyase-like 245 556 IPR011050 -
Lac9g0505 561 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Lac9g0505 561 CDD PMEI-like_3 38 180 - -
Lac9g0505 561 FunFam Pectinesterase 244 559 - -
Lac9g0505 561 Gene3D - 245 559 IPR012334 -
Lac9g0505 561 PANTHER PECTINESTERASE 15 550 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Lac9g0505 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 181 IPR035513 -
Lac9g0505 561 Pfam Pectinesterase 251 545 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Lac9g0505 561 Pfam Plant invertase/pectin methylesterase inhibitor 36 173 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2485 Lac-Chr4:44186106 Lac9g0505 Lac-Chr9:9587043 3.90E-163 dispersed
Lac9g0227 Lac-Chr9:3569689 Lac9g0505 Lac-Chr9:9587043 3.40E-69 dispersed
Lac9g0229 Lac-Chr9:3632111 Lac9g0505 Lac-Chr9:9587043 2.40E-72 dispersed
Lac13g0573 Lac-Chr13:4247371 Lac9g0505 Lac-Chr9:9587043 4.60E-119 transposed
Lac2g0774 Lac-Chr2:5992757 Lac9g0505 Lac-Chr9:9587043 4.50E-159 transposed
Lac2g1495 Lac-Chr2:12937640 Lac9g0505 Lac-Chr9:9587043 2.40E-44 transposed
Lac6g0425 Lac-Chr6:3474344 Lac9g0505 Lac-Chr9:9587043 6.50E-49 transposed
Lac11g1717 Lac-Chr11:31201364 Lac9g0505 Lac-Chr9:9587043 2.70E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0505 K01051 - csv:101216984 850.121