Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0563 ATGTCGTCGTCGATTTCACCGTGTGCGGCGTGCAAACTCCGGAGGCAAAAATGCACACAAGAATGTGTATTCGCTCCTTATTTCCCACCGGATCAGCCACAGAAATTCGCTAACGTCCACAAAGTATTCGGTGCAAGCAACGTGGCGAAGCTTTTGAGCGAACTGAACGCAACGCAGCGGGAGGACGCAGTGAACTCATTAGCCTACGAGGCGGAGTTCCGTTTGCGTGACCCTGTGTACGGCTGCGTGGGCCTCATCTCTCTCCTCCAACACAAACTCAAGCAAATGCAAAGCGACCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCTCAAGCCATGCTCCCAATTCTCCAGCCTCCCACCGCCATCATGGCCCAGCAAGGCGGCAGCCCTTCCTCCTCCGCCGTCCTCCCCTACAACATGTCCGGGATTCCCCCTTCTGCCGGTGGCTCCTCTCAGCAGATGCTCATCCGCGACTCGCCCCAGCAACACCACCAAATGCAGCAGCAGCAACAGCAACAGCTGTTCGAGGCCCAGCAGTTGGCTGTGGCCGTGGCCGCCAGAGAGCAGCAGGAAATGTTTAGAGCGTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTCGACCCGGCCGGGACTGGCGGCGGCGGGGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGGACTTTTGTTGATAATAGCTACCAAATTCAAACGCAACCTGAACATTCACATTCGCATTCTCATCACCATCATCAGCAGCAGCTTCCAGTACAGCTGTTTCTTCAACCTCAGCAAACACAAGTCGAGCAGCAGCAGCAGCAACAACAACCCCATCAACACCAATCGCAGCAAACCCAGAAGCCTGAAGCCACTGCAGATGATGGTAGGAATATTAATATCGCTCCATCTTGTTAA 972 53.5 MSSSISPCAACKLRRQKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLSELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPPTAIMAQQGGSPSSSAVLPYNMSGIPPSAGGSSQQMLIRDSPQQHHQMQQQQQQQLFEAQQLAVAVAAREQQEMFRAYEQKQTQQHHHSQRQHELLRFNGFDPAGTGGGGGFNQMNSASNLTLGTFVDNSYQIQTQPEHSHSHSHHHHQQQLPVQLFLQPQQTQVEQQQQQQQPHQHQSQQTQKPEATADDGRNINIAPSC 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10833321 10834292 + Lag0008050.1 Lac9g0563 619489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0563 323 Coils Coil 86 106 - -
Lac9g0563 323 MobiDBLite consensus disorder prediction 283 323 - -
Lac9g0563 323 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lac9g0563 323 MobiDBLite consensus disorder prediction 283 311 - -
Lac9g0563 323 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lac9g0563 323 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g0563 Lac-Chr9:10833321 Lac9g2362 Lac-Chr9:42835271 2.60E-34 dispersed
Lac9g0563 Lac-Chr9:10833321 Lac9g0565 Lac-Chr9:10928658 2.50E-85 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24387 PF03195 LOB 5.80E-40 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0563 - - - 0.0