Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0565 ATGTCATCGTCGAATTCACCATGTGCGGCGTGCAAATTCCTGAGGCGAAAATGCACACAAGAATGCGTGTTCGCTCCTTATTTCCCACCGGATCAGCCACAGAAATTCGCGAACGTCCACAAGGTATTCGGCGCAAGCAACGTGGCGAAGCTTTTGAACGAACTGAACGCGTCGCAGCGCGAGGACGCAGTGAACTCATTAGCCTACGAGGCCGAGTTCCGTTTACGAGACCCTGTGTACGGCTGCGTGGGCCTCATCTCTCTCCTCCAGCACAAGCTCAAGCAAATGCAAAGCGATCTCTACAATGCCAAAAAGGAACTCGCCTCTTACATTGGCCCTCAAGCCATGCTCCCAATGGCCCCGCAAGGCGCCAGCCCTTCCTCCGTCCTGTCCTACAACATGTCCCCCATGCTCGGGATTTCCCCTTCTCCGGGCTCCTCTCAGCAGATGCTCATCCGCGACTCGCCCCAGCAACACCACCAAATACAGCAGCAGCAACAGCAACAGCTGTTCGAGGCTCAGCAGTTGGCTGCAGCCGTGGCCGCCAGAGAGCAGCAGGAAATGTTTAGAGCGTACGAGCAGAAACAAACCCAACAGCACCATCATTCTCAACGCCAACACGAGCTCTTGAGGTTCAATGGGTTCGACCCGGCTGGGACTGGCGGCAGCGGCGGTGGGTTTAATCAAATGAATTCGGCGTCTAATTTGACATTGGGCACTTTTGTCGATAGCAGCTACCAAATTCAAACGCAACCTGAACATTCACATTCGCATTCGCATTCGCATTCGCATCACCATCATCATCAGCAGCTTCCGGTACAGCTGTTTCTTCAACCTCAGCAAACACAAGTCGAGCAGCAGCAGCAGCAACCACAACAACCCCATCAACACCAATCGCAGCAAACCCAGAAGCCTGAAGCCACTGCAGATGATGGTAGGAATATTAACATTGGCCCATCTTGTTAA 966 53.42 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHKLKQMQSDLYNAKKELASYIGPQAMLPMAPQGASPSSVLSYNMSPMLGISPSPGSSQQMLIRDSPQQHHQIQQQQQQQLFEAQQLAAAVAAREQQEMFRAYEQKQTQQHHHSQRQHELLRFNGFDPAGTGGSGGGFNQMNSASNLTLGTFVDSSYQIQTQPEHSHSHSHSHSHHHHHQQLPVQLFLQPQQTQVEQQQQQPQQPHQHQSQQTQKPEATADDGRNINIGPSC 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10928658 10929623 + Lag0008052.1 Lac9g0565 619491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0565 321 Coils Coil 86 106 - -
Lac9g0565 321 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lac9g0565 321 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 260 - -
Lac9g0565 321 MobiDBLite consensus disorder prediction 248 321 - -
Lac9g0565 321 MobiDBLite consensus disorder prediction 273 309 - -
Lac9g0565 321 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac6g2155 Lac-Chr6:37715647 Lac9g0565 Lac-Chr9:10928658 2.20E-46 dispersed
Lac8g0240 Lac-Chr8:2655989 Lac9g0565 Lac-Chr9:10928658 3.90E-40 dispersed
Lac8g2566 Lac-Chr8:43367021 Lac9g0565 Lac-Chr9:10928658 5.60E-40 dispersed
Lac8g2875 Lac-Chr8:45888163 Lac9g0565 Lac-Chr9:10928658 4.60E-36 dispersed
Lac9g0565 Lac-Chr9:10928658 Lac9g2362 Lac-Chr9:42835271 1.40E-35 dispersed
Lac9g0563 Lac-Chr9:10833321 Lac9g0565 Lac-Chr9:10928658 2.50E-85 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24388 PF03195 LOB 1.90E-41 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0565 - - - 0.0