Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0810 ATGGGAATTATAGCGACGGCGTCCAGTTCTTGTATTCCACCATTTTTCTGCAACTCAAAGACTCATTCTAATTCTATGTCGCAACAAGACTACCACCAGGCCGCCGCGGCTGCAGGCTTCTTCACGCCCTTCTCCAATGGCTTTGACAGATCCTCCACAGCCGCCGCCAACACCCACCAAGACCCTCAACATCAACACTACCACCACATAGCCCACCAGATCCGCAAGGAGAAGCTCCGCCTCCAAGGATTCGACCCACCGCCTCCTCCTCCGTCCTTGGTCGGAATTGACGACGACGATGACGACGACCAATCCGCCAGCGCCGGCGCCCTCCACCACGTCTACGACTCTACAGGAATTTTGTCCGAAATGTTCAATTTTCCTCCACCTCCACCGCCACCGCCGCCGCAGACGGACTGGTACGGGAACCGGCAAGCAATCAACGCCGCCGACTCAGCGGTGGCCATGCAGCTGTTTCTGATGAACCCAAATCCCCGGTCGCCGTCTTCGCCAGCGCCAGCGCCAGCAGCGCCGGCGGTGTCGTCAACACTGCACATGCTTCTTCCAAACCCCCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAACCAGGAGACCATTCTTCTTCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTATCATCGTCCTTAGAAGCAGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCGGGTTACTTTATCAGAACCACCACAACCATCATCACCCTCAACACGTCCACGTCGGAATCGGGTCTTCCAATTCTTCATTGGGAGTTGTCAACTTGTTGAGAAACTCAAAGTATGTAAAAGCTGCACAAGAATTGTTGGAGGAGTTTTGTAGCGTTGGAAGAGGCCAGTTCAAGAAGAATAACAATAAATTGAATAAATCAAATTTGCCCTCCAACTCCAACTCCCACGGCGGCGATGGCGGCGGAGTCTCTTCCTCAACGTCCAAGGACCACCCACAGCCACAACCGCCGGCTATGTCAGCAGCTGATAGGATTGAACATCAAAGGAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATAGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAATTCATTCGACGTGGTGATGGGGTTCGGGGCGGCGGTGCCATACACGGCATTGGCGCAGAAGGCGATGTCGAGGCATTTCAGGTGTCTGAAGGACGCCATATCAGCGCAGCTCAAGCACAGCTGCGAGATGTTGGGGGAGAAAGATGGGGGAGCAGCTGGAAGAGGCTCCGGAATCACAAAGGGGGAGACTCCAAGGCTTAAGCTCTTGGAGCAAAGCTTGAGGCAGCAACGAGCCTTCCACCAAATGGGCATGATGGAACAAGAAGCTTGGCGTCCCCAACGCGGCTTGCCCGAACGCTCTGTCAACATCTTGCGAGCCTGGCTCTTCGAGCATTTCCTTCACCCGTATCCTAGTGATGCTGATAAGCATTTGTTGGCTAGACAGACTGGTTTATCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAAGAAGATGATGACGATGATAATACAGATGAGGACAGAGAAACCAACCACCACCACTCACAAACCACGCCTCCAACGCCGCCCACTTCCACCGCTGCACCACCACCACCACCGCCGCCCTCCTCCGCCGCTCCACCACCCAAAAGACCCGATCACACCTCCGAAAACGACCCTTCCGCCTTCTCGCAAAACCAAGCAAATCAAAAGCATCAACAATATTCCTCCTCCTCCTCCGCCGCAACCCAGGCAGCGGCGCCTCCTCCGATGGTGGCGCACTGCTTTCCGGGCAGCCACTATGACTCAGAGCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTCGCTGCACCTGATCATCAATTCGGGACCACAAGTGGCTCTGCCACGTCTGACATCCAGGGGCCCACCACACTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCACGCCGGCAATATCCCCGACAACAACCCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAA 2154 54.27 MGIIATASSSCIPPFFCNSKTHSNSMSQQDYHQAAAAAGFFTPFSNGFDRSSTAAANTHQDPQHQHYHHIAHQIRKEKLRLQGFDPPPPPPSLVGIDDDDDDDQSASAGALHHVYDSTGILSEMFNFPPPPPPPPPQTDWYGNRQAINAADSAVAMQLFLMNPNPRSPSSPAPAPAAPAVSSTLHMLLPNPPSSGGSFGQFTWGVVPEQEPGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSGLLYQNHHNHHHPQHVHVGIGSSNSSLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNNNKLNKSNLPSNSNSHGGDGGGVSSSTSKDHPQPQPPAMSAADRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDVVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQLKHSCEMLGEKDGGAAGRGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKEDDDDDNTDEDRETNHHHSQTTPPTPPTSTAAPPPPPPPSSAAPPPKRPDHTSENDPSAFSQNQANQKHQQYSSSSSAATQAAAPPPMVAHCFPGSHYDSELQDTCRRVSVLAAPDHQFGTTSGSATSDIQGPTTLIRFGTTAGDVSLTLGLRHAGNIPDNNPSFSLRSEFGGC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 17043637 17049406 - Lag0008297.1 Lac9g0810 619736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0810 717 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 231 554 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac9g0810 717 Gene3D - 475 537 - -
Lac9g0810 717 MobiDBLite consensus disorder prediction 81 106 - -
Lac9g0810 717 MobiDBLite consensus disorder prediction 540 626 - -
Lac9g0810 717 MobiDBLite consensus disorder prediction 305 339 - -
Lac9g0810 717 SMART prehox3 272 417 IPR006563 -
Lac9g0810 717 MobiDBLite consensus disorder prediction 569 589 - -
Lac9g0810 717 MobiDBLite consensus disorder prediction 201 224 - -
Lac9g0810 717 Pfam Associated with HOX 278 416 IPR006563 -
Lac9g0810 717 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Lac9g0810 717 SUPERFAMILY Homeodomain-like 474 539 IPR009057 -
Lac9g0810 717 CDD homeodomain 472 533 IPR001356 GO:0003677(InterPro)
Lac9g0810 717 SMART HOX_1 472 536 IPR001356 GO:0003677(InterPro)
Lac9g0810 717 MobiDBLite consensus disorder prediction 598 625 - -
Lac9g0810 717 MobiDBLite consensus disorder prediction 305 350 - -
Lac9g0810 717 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677(InterPro)
Lac9g0810 717 FunFam BEL1-like homeodomain protein 4 475 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac9g0810 Lac-Chr9:17043637 Lac9g1723 Lac-Chr9:36821664 5.30E-72 dispersed
Lac11g2061 Lac-Chr11:36432936 Lac9g0810 Lac-Chr9:17043637 3.70E-79 transposed
Lac1g2488 Lac-Chr1:46314448 Lac9g0810 Lac-Chr9:17043637 6.80E-114 transposed
Lac7g2385 Lac-Chr7:40457944 Lac9g0810 Lac-Chr9:17043637 1.80E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24399 PF07526 POX 1.30E-52 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0810 - - - 0.0