Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g0990 ATGGACGACATCGACATTCTGAAATCCTCCAGCGAGCCGATCGACATGTCGTCCACAATCCTCCTCAACAACAATCCCCACTACTCTCCACTCCCCTTCAGCTTCTCCGAGTTCTCATCTCCGCCCTCCTTGTTCCACACCCCATTGATCCCGGAGCCTCCGCCTCCGCCGGCGGTGCAGCAGAAGCGCGGCGGCGGCGGCGGAGGCATGGCAGCGATGAGAGAGATGATATTTCGAATAGCGGCGATGCAGCCCATACAGATAGACCCGGAGGCGATAAAGGCGCCGAAGCGGAGGAACGTGAGGATCTCGAAGGACCCACAGAGCGTGGCGGCTCGGCACCGGCGGGAGAGGATCAGCCAGAAGATCAGGATCCTGCAGCGGCTGGTCCCCGGCGGAACCAAGATGGACACGGCGTCGATGCTGGACGAGGCGGTTCATTACGTCAAGTTCTTGAAGAGGCAAGTGCAGACGCTGGAGCAGGCTGGCTTTCACAACACAAACACCAACACCAATGCCGGTTTTATGAATTGTGCCAATCTTACTTATTCTTCTGCGCTTTTGAAGGCTTGCCAAATGCCCCACAATCCAACTATGCCTGCTTCTTTGCAAATGCATTCATGA 624 56.73 MDDIDILKSSSEPIDMSSTILLNNNPHYSPLPFSFSEFSSPPSLFHTPLIPEPPPPPAVQQKRGGGGGGMAAMREMIFRIAAMQPIQIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFHNTNTNTNAGFMNCANLTYSSALLKACQMPHNPTMPASLQMHS 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 22954940 22955563 + Lag0008477.1 Lac9g0990 619916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g0990 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 162 IPR036638 GO:0046983(InterPro)
Lac9g0990 207 Pfam Helix-loop-helix DNA-binding domain 112 153 IPR011598 GO:0046983(InterPro)
Lac9g0990 207 FunFam BHLH transcription factor 106 170 - -
Lac9g0990 207 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 69 194 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g0990 207 CDD bHLH_AtIND_like 104 160 - -
Lac9g0990 207 Gene3D - 102 173 IPR036638 GO:0046983(InterPro)
Lac9g0990 207 SMART finulus 109 158 IPR011598 GO:0046983(InterPro)
Lac9g0990 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983(InterPro)
Lac9g0990 207 Coils Coil 142 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2390 Lac-Chr1:45228306 Lac9g0990 Lac-Chr9:22954940 3.60E-34 dispersed
Lac2g0328 Lac-Chr2:2450276 Lac9g0990 Lac-Chr9:22954940 1.00E-38 dispersed
Lac6g0294 Lac-Chr6:2407016 Lac9g0990 Lac-Chr9:22954940 2.80E-43 dispersed
Lac8g1098 Lac-Chr8:23415130 Lac9g0990 Lac-Chr9:22954940 2.20E-08 dispersed
Lac8g1945 Lac-Chr8:37821383 Lac9g0990 Lac-Chr9:22954940 3.10E-12 dispersed
Lac9g0990 Lac-Chr9:22954940 Lac6g0287 Lac-Chr6:2351705 1.70E-07 dispersed
Lac12g1391 Lac-Chr12:23231994 Lac9g0990 Lac-Chr9:22954940 3.30E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24402 PF00010 HLH 7.70E-07 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g0990 - - - 0.0