Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1078 ATGACACCTCATACTTTGACCTTCTTCATTTCCTTTCTATCACTATTCACTACATTCATCGGAGCCTCCACCATTTCCTCCAGGAGGATTCTGCATCAGCCGCTCTTTCCGGTAGGCTCCGAGCCGCCGCCGGACATTGACTTGCCGCCACCCCCGCCGCCGCCGGAATCTCCCTCCGACGACCAGCCCTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGACTCAACCGCCTCCCTCCTCTACCAATGGAACTATGCCAATCCCGGCCGCTACGGCGCAACCCTCCAAGCCGACGAAGACCGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTCGCGTTCTTTCTCTATCGCCACCGGGCCAAGCATCCAGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCAGGAGAGATTTGCGGAGGATTCCAGAGCGCCGCCGTCCAGTTTTTTCTATATCGGAACCGTGGAGCCGACCCAGAGCTCTATTGTTGACCAGAATGCTGCTAATGGTGCTAATAGTTCGCCGTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTACCGGCCGAGTCCCGAATTACAGCCACTGCCGCCTCTGCCGAAGCCGCCGATGGCTATGTCACCTCCGGCTCTTTCGTCTTCCGATGAGGAAAGCCAGGACACGGCGTTTCATACTCCGCAATGCTCGTCGATTGTCAGTCACGACGATGGCTATTTCTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGCTCGACGGCGAGTTTTAAGAATGATCATATCAATTCCAATCCTCCTCCTATTCCTCATTCTAAAAGAACCTCTCCGAAATCGAGATTTTCCGTTTCTTCGACGAAACGCAATTCATCTCAGCCTCAGCCACCGACGCCGCCGCCTCTTCCACCGCGTCCGGTTGATGATCTTCGTGAAACTCCAAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCATCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATCAGCAATTCAGCCACATTTCCTCAGGTTCCGAAACCTGCTGCAGCTCCACCTCCACCTCCGCCTCCACCGCCCCCACCGCCACCTCCACGACCACCAGCGCGTCCAGTTTCTTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGCCTGCAGTCACTCCTCCAGATTCCTCTAAGTCACAGTCCTACTCAACAGCGAGATCAAACTCATCTTCCAAATCCCCACCGAGTTCTGCGACAGAAAATTCTGCTAAGGAAGATGTTGTCCAGAGGATTAATTCTATGGAGAGGCTTGAAGCAGAGGATCCAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTCTGGGATCAACTAAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTTTTCGGCTTCAATTCTGCAAATTCTGTTCCAAAAGATCAGGTCACGAGGAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTAGTAAAGATGGCTCCAACCAAAGAGGAAGAGATTAAACTCAGAGAGTATTGTGGTGATGCTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGTCAGTGCTTGAAGTCCCATTTGCCTTTAAAAGAGTTGAAGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGGAAGTCATTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAACGTCGGTACGAATCGTGGTGACGCAAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATTAAGGGAACAGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATTAGATCGGAAGGTGGTGCTGATTCAACTAATGACACCCTTCAACCGCGTACGCAATCCAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTAAGCAGAGACCTTAGCAATGTAAAAAAAGCAGCAGGTATGGACTCAGACGTATTAAGCAGCTATGTCACAAAGCTCGAAATGGGACTCGAAAAAGTAAGGTTGGTTTTGCAATTCGAGAAGCCAGGAATGCAGGGAAGATTCTTCGACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAAGAAATAGTTAGGATCAAGGCCGACGAAAGGCAAGCTCTATCGCTTGTGAAAGGGGCGACAGAGTATTTCCATGGTGATGCTGCCAAGGAGGAAGCTCATCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTAGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTGGGTGCTGCTAGATCCTTTCGGATATCGGCAACAGCCTCGCTCCCAGTCCTCAGCAGATACAATGTCAGACACGACCAAAGCTCCGACGAGGAAAGCTCATCTCCATGA 2706 48.71 MTPHTLTFFISFLSLFTTFIGASTISSRRILHQPLFPVGSEPPPDIDLPPPPPPPESPSDDQPFFHELPTSPDQTQPPPSSTNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNQERFAEDSRAPPSSFFYIGTVEPTQSSIVDQNAANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHINSNPPPIPHSKRTSPKSRFSVSSTKRNSSQPQPPTPPPLPPRPVDDLRETPNSKETMPFSSTRPKFSKHPPPPNLALLQTISNSATFPQVPKPAAAPPPPPPPPPPPPPPRPPARPVSYSTPQKLGLSETRMPAVTPPDSSKSQSYSTARSNSSSKSPPSSATENSAKEDVVQRINSMERLEAEDPEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKDQVTRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKSVLEVPFAFKRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDTLQPRTQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGRFFDSMKTFLKEAEEEIVRIKADERQALSLVKGATEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDQSSDEESSSP 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25485814 25489775 + Lag0008565.1 Lac9g1078 620004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1078 901 PANTHER FORMIN-RELATED 13 896 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lac9g1078 901 SUPERFAMILY Formin homology 2 domain (FH2 domain) 371 861 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 220 300 - -
Lac9g1078 901 SMART it6_source 454 865 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 36 97 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 200 216 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 77 97 - -
Lac9g1078 901 ProSiteProfiles Formin homology-2 (FH2) domain profile. 454 876 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 170 187 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 37 60 - -
Lac9g1078 901 Gene3D Formin, FH2 domain 447 861 IPR042201 -
Lac9g1078 901 PRINTS Proline rich extensin signature 355 380 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 322 338 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 192 204 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 293 314 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 206 222 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 132 152 - -
Lac9g1078 901 Pfam Formin Homology 2 Domain 457 850 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 405 442 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 170 442 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 301 316 - -
Lac9g1078 901 Coils Coil 797 817 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 362 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1078 K28090 - - csv:101208011 1431.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2477 Lac-Chr11:41003786 Lac9g1078 Lac-Chr9:25485814 1.90E-142 dispersed
Lac2g1354 Lac-Chr2:11379705 Lac9g1078 Lac-Chr9:25485814 1.00E-103 dispersed
Lac9g1078 Lac-Chr9:25485814 Lac9g2080 Lac-Chr9:40406557 2.80E-102 dispersed
Lac3g2794 Lac-Chr3:44066133 Lac9g1078 Lac-Chr9:25485814 5.80E-108 transposed
Lac6g0039 Lac-Chr6:356970 Lac9g1078 Lac-Chr9:25485814 9.10E-77 transposed
Lac13g1726 Lac-Chr13:19549443 Lac9g1078 Lac-Chr9:25485814 4.80E-145 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac13g1726 . 454 930 FH2 protein (formin) Gene Family AT3G25500 66.7 4.6e-165 579.7
Lac9g1078 . 458 881 FH2 protein (formin) Gene Family AT3G25500 63.7 1.9e-142 504.6
Lac3g2794 . 493 894 FH2 protein (formin) Gene Family AT3G25500 51.2 2.0e-104 378.3
Lac11g2477 . 616 1074 FH2 protein (formin) Gene Family AT2G43800 60.5 1.0e-144 511.9
Lac9g1078 . 458 893 FH2 protein (formin) Gene Family AT2G43800 55.0 1.3e-123 441.8
Lac9g2080 . 291 645 FH2 protein (formin) Gene Family AT4G15200 52.4 3.8e-55 213.4
Lac2g1354 . 454 603 FH2 protein (formin) Gene Family AT4G15200 64.9 2.3e-47 187.6
Lac2g1354 . 458 905 FH2 protein (formin) Gene Family AT5G54650 67.5 2.5e-167 587.0
Lac9g2080 . 507 969 FH2 protein (formin) Gene Family AT5G54650 62.7 1.5e-159 561.2
Lac11g2477 . 627 1029 FH2 protein (formin) Gene Family AT5G54650 50.5 3.3e-103 374.0
Lac9g1078 . 8 900 FH2 protein (formin) Gene Family AT5G67470 57.6 9.5e-236 814.3
Lac11g2477 . 608 1072 FH2 protein (formin) Gene Family AT5G67470 58.8 1.2e-134 478.4
Lac13g1726 . 491 926 FH2 protein (formin) Gene Family AT5G67470 62.2 3.4e-132 470.3
Lac3g2794 . 491 896 FH2 protein (formin) Gene Family AT5G67470 51.0 7.8e-105 379.4
Lac13g0243 . 347 826 FH2 protein (formin) Gene Family AT1G59910 51.3 2.7e-124 444.1
Lac9g1078 . 482 858 FH2 protein (formin) Gene Family AT5G48360 50.1 4.7e-90 330.1
Lac2g1354 . 466 877 FH2 protein (formin) Gene Family AT3G05470 51.0 5.3e-106 383.3
Lac9g1078 . 462 857 FH2 protein (formin) Gene Family AT3G05470 51.2 7.7e-105 379.4
Lac11g2471 . 916 1227 FH2 protein (formin) Gene Family AT1G42980 50.5 7.4e-68 255.0
Lac11g2471 . 1 1234 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1222.2
Lac3g0591 . 1369 1690 FH2 protein (formin) Gene Family AT5G07650 73.9 2.0e-128 457.6
Lac10g0118 . 982 1270 FH2 protein (formin) Gene Family AT5G07650 70.2 1.4e-110 398.3
Lac2g0546 . 1072 1400 FH2 protein (formin) Gene Family AT5G07650 62.9 8.7e-108 389.0
Lac3g0209 . 935 1253 FH2 protein (formin) Gene Family AT5G07650 62.2 1.1e-107 388.7
Lac11g2471 . 900 1231 FH2 protein (formin) Gene Family AT5G07650 59.6 1.1e-107 388.7
Lac3g0591 . 1296 1680 FH2 protein (formin) Gene Family AT5G07770 69.7 3.4e-141 499.6
Lac10g0118 . 903 1270 FH2 protein (formin) Gene Family AT5G07770 63.4 5.6e-120 429.1
Lac3g0209 . 858 1246 FH2 protein (formin) Gene Family AT5G07770 57.3 1.1e-115 414.8
Lac2g0546 . 996 1392 FH2 protein (formin) Gene Family AT5G07770 57.3 1.9e-115 414.1
Lac11g2471 . 836 1225 FH2 protein (formin) Gene Family AT5G07770 55.8 5.5e-115 412.5
Lac2g0546 . 988 1400 FH2 protein (formin) Gene Family AT3G32400 75.8 7.2e-169 591.3
Lac3g0209 . 842 1255 FH2 protein (formin) Gene Family AT3G32400 66.0 2.7e-147 519.6
Lac11g2471 . 836 1230 FH2 protein (formin) Gene Family AT3G32400 66.0 3.7e-141 499.2
Lac3g0591 . 1296 1690 FH2 protein (formin) Gene Family AT3G32400 65.5 4.9e-141 498.8
Lac10g0118 . 875 1263 FH2 protein (formin) Gene Family AT3G32400 59.2 2.7e-123 439.9
Lac2g0546 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 50.4 0.0e+00 1156.7
Lac3g0209 . 1 1255 FH2 protein (formin) Gene Family AT2G25050 51.9 6.4e-293 1004.6
Lac3g0591 . 1297 1690 FH2 protein (formin) Gene Family AT5G07780 63.0 5.1e-124 442.2
Lac10g0118 . 906 1270 FH2 protein (formin) Gene Family AT5G07780 56.4 1.1e-102 371.3
Lac11g2471 . 837 1226 FH2 protein (formin) Gene Family AT5G07780 52.7 5.5e-102 369.0
Lac2g0546 . 997 1393 FH2 protein (formin) Gene Family AT5G07780 53.2 2.7e-101 366.7
Lac3g0209 . 865 1246 FH2 protein (formin) Gene Family AT5G07780 53.8 7.9e-101 365.2
Lac3g0591 . 1 1699 FH2 protein (formin) Gene Family AT5G07740 63.7 0.0e+00 1115.1
Lac3g0591 . 1368 1697 FH2 protein (formin) Gene Family AT5G07760 73.5 9.2e-127 452.2
Lac10g0118 . 981 1270 FH2 protein (formin) Gene Family AT5G07760 70.7 1.7e-109 394.8
Lac3g0209 . 934 1253 FH2 protein (formin) Gene Family AT5G07760 64.2 8.6e-109 392.5
Lac2g0546 . 1071 1408 FH2 protein (formin) Gene Family AT5G07760 62.9 4.3e-108 390.2
Lac11g2471 . 910 1231 FH2 protein (formin) Gene Family AT5G07760 61.3 3.1e-106 384.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36