Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1078 ATGACACCTCATACTTTGACCTTCTTCATTTCCTTTCTATCACTATTCACTACATTCATCGGAGCCTCCACCATTTCCTCCAGGAGGATTCTGCATCAGCCGCTCTTTCCGGTAGGCTCCGAGCCGCCGCCGGACATTGACTTGCCGCCACCCCCGCCGCCGCCGGAATCTCCCTCCGACGACCAGCCCTTTTTCCATGAGCTGCCCACCAGTCCAGATCAGACTCAACCGCCTCCCTCCTCTACCAATGGAACTATGCCAATCCCGGCCGCTACGGCGCAACCCTCCAAGCCGACGAAGACCGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTCTCTGCTCTCGCGTTCTTTCTCTATCGCCACCGGGCCAAGCATCCAGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATCAGGAGAGATTTGCGGAGGATTCCAGAGCGCCGCCGTCCAGTTTTTTCTATATCGGAACCGTGGAGCCGACCCAGAGCTCTATTGTTGACCAGAATGCTGCTAATGGTGCTAATAGTTCGCCGTATCGCAAGCTGAATTCGATTAAGAGGTCGGATCGGTACCGGCCGAGTCCCGAATTACAGCCACTGCCGCCTCTGCCGAAGCCGCCGATGGCTATGTCACCTCCGGCTCTTTCGTCTTCCGATGAGGAAAGCCAGGACACGGCGTTTCATACTCCGCAATGCTCGTCGATTGTCAGTCACGACGATGGCTATTTCTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGCTCGACGGCGAGTTTTAAGAATGATCATATCAATTCCAATCCTCCTCCTATTCCTCATTCTAAAAGAACCTCTCCGAAATCGAGATTTTCCGTTTCTTCGACGAAACGCAATTCATCTCAGCCTCAGCCACCGACGCCGCCGCCTCTTCCACCGCGTCCGGTTGATGATCTTCGTGAAACTCCAAATTCGAAAGAAACAATGCCTTTCTCTTCCACGAGACCTAAATTTTCGAAGCATCCGCCTCCGCCGAATTTGGCGCTTCTTCAAACAATCAGCAATTCAGCCACATTTCCTCAGGTTCCGAAACCTGCTGCAGCTCCACCTCCACCTCCGCCTCCACCGCCCCCACCGCCACCTCCACGACCACCAGCGCGTCCAGTTTCTTATTCAACGCCACAAAAACTAGGGTTATCGGAAACCAGAATGCCTGCAGTCACTCCTCCAGATTCCTCTAAGTCACAGTCCTACTCAACAGCGAGATCAAACTCATCTTCCAAATCCCCACCGAGTTCTGCGACAGAAAATTCTGCTAAGGAAGATGTTGTCCAGAGGATTAATTCTATGGAGAGGCTTGAAGCAGAGGATCCAGAAGGTTCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGGGCAACCTCAGACCGAGCTACAGTCTGGGATCAACTAAAATCAAGCTCATTCCAATTAAACGAGGACATGATGGAGACACTTTTCGGCTTCAATTCTGCAAATTCTGTTCCAAAAGATCAGGTCACGAGGAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAATAGGGTATTGGACCCCAAAAAGTCGCAGAACATTGCAATACTCCTAAGAGCACTTAATGTCACGCGCGATGAGGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTTTTAGAAACTCTAGTAAAGATGGCTCCAACCAAAGAGGAAGAGATTAAACTCAGAGAGTATTGTGGTGATGCTTCAAAATTAGGGACTGCAGAAAGATTTCTCAAGTCAGTGCTTGAAGTCCCATTTGCCTTTAAAAGAGTTGAAGCCATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGGAAGTCATTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTTAAGACAGGAAATAGGATGAACGTCGGTACGAATCGTGGTGACGCAAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATTAAGGGAACAGATGGAAAGACAACATTGCTTCATTTTGTTGTTCAAGAAATTATTAGATCGGAAGGTGGTGCTGATTCAACTAATGACACCCTTCAACCGCGTACGCAATCCAAAATCGAGGATGAATTTAGAAAGCAGGGCTTGCAGGTTGTGGCTGGACTAAGCAGAGACCTTAGCAATGTAAAAAAAGCAGCAGGTATGGACTCAGACGTATTAAGCAGCTATGTCACAAAGCTCGAAATGGGACTCGAAAAAGTAAGGTTGGTTTTGCAATTCGAGAAGCCAGGAATGCAGGGAAGATTCTTCGACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAAGAAATAGTTAGGATCAAGGCCGACGAAAGGCAAGCTCTATCGCTTGTGAAAGGGGCGACAGAGTATTTCCATGGTGATGCTGCCAAGGAGGAAGCTCATCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTAGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTGGGTGCTGCTAGATCCTTTCGGATATCGGCAACAGCCTCGCTCCCAGTCCTCAGCAGATACAATGTCAGACACGACCAAAGCTCCGACGAGGAAAGCTCATCTCCATGA 2706 48.71 MTPHTLTFFISFLSLFTTFIGASTISSRRILHQPLFPVGSEPPPDIDLPPPPPPPESPSDDQPFFHELPTSPDQTQPPPSSTNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNQERFAEDSRAPPSSFFYIGTVEPTQSSIVDQNAANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPMAMSPPALSSSDEESQDTAFHTPQCSSIVSHDDGYFSPASRRSNSVKSCSTASFKNDHINSNPPPIPHSKRTSPKSRFSVSSTKRNSSQPQPPTPPPLPPRPVDDLRETPNSKETMPFSSTRPKFSKHPPPPNLALLQTISNSATFPQVPKPAAAPPPPPPPPPPPPPPRPPARPVSYSTPQKLGLSETRMPAVTPPDSSKSQSYSTARSNSSSKSPPSSATENSAKEDVVQRINSMERLEAEDPEGSKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKDQVTRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKSVLEVPFAFKRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDTLQPRTQSKIEDEFRKQGLQVVAGLSRDLSNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGRFFDSMKTFLKEAEEEIVRIKADERQALSLVKGATEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDQSSDEESSSP 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 25485814 25489775 + Lag0008565.1 Lac9g1078 620004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1078 901 PANTHER FORMIN-RELATED 13 896 IPR027643 GO:0003779(InterPro)|GO:0030036(InterPro)|GO:0045010(InterPro)|GO:0051015(InterPro)
Lac9g1078 901 SUPERFAMILY Formin homology 2 domain (FH2 domain) 371 861 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 220 300 - -
Lac9g1078 901 SMART it6_source 454 865 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 36 97 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 200 216 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 77 97 - -
Lac9g1078 901 ProSiteProfiles Formin homology-2 (FH2) domain profile. 454 876 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 170 187 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 37 60 - -
Lac9g1078 901 Gene3D Formin, FH2 domain 447 861 IPR042201 -
Lac9g1078 901 PRINTS Proline rich extensin signature 355 380 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 322 338 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 192 204 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 293 314 - -
Lac9g1078 901 PRINTS Proline rich extensin signature 206 222 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 132 152 - -
Lac9g1078 901 Pfam Formin Homology 2 Domain 457 850 IPR015425 -
Lac9g1078 901 MobiDBLite consensus disorder prediction 405 442 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 170 442 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 301 316 - -
Lac9g1078 901 Coils Coil 797 817 - -
Lac9g1078 901 MobiDBLite consensus disorder prediction 362 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2477 Lac-Chr11:41003786 Lac9g1078 Lac-Chr9:25485814 1.90E-142 dispersed
Lac2g1354 Lac-Chr2:11379705 Lac9g1078 Lac-Chr9:25485814 1.00E-103 dispersed
Lac9g1078 Lac-Chr9:25485814 Lac9g2080 Lac-Chr9:40406557 2.80E-102 dispersed
Lac3g2794 Lac-Chr3:44066133 Lac9g1078 Lac-Chr9:25485814 5.80E-108 transposed
Lac6g0039 Lac-Chr6:356970 Lac9g1078 Lac-Chr9:25485814 9.10E-77 transposed
Lac13g1726 Lac-Chr13:19549443 Lac9g1078 Lac-Chr9:25485814 4.80E-145 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1078 K28090 - csv:101208011 1431.0