Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1138 ATGTGGGATCTCAATGATTCGCCCGATCATGGCGGAACTGATGAATTTGAGGGCCTTTCATCGATTGACGGCGATGACGACAGAGCGAAATGGGTAGGATCCATTAATTCCAACTCGAGCTCTTCGGCGGTGGTTATGGAGGATGGATCCGACGCCGACGAGGCCAGCGCCGGTGAGGGCGAACCGCTAGTCCACCGTAAAAACTTCTCGGTAACGCACCCGCCGGCGACTCGTCAGTTCTTCCCCCTGGAGGATTCCAACGTGGGGGCTTCATCGGCCGCCGGCGGCGGTTCTACTACGTTCCCTCGAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACGGAGCCTGTTGCCGCCGTTAGACCGGTGGCGGTTCTGCAGCCAATAAAGAAAAGCCGGCGAGGGCCGAGGTCCCGGAGCTCTCAATATCGCGGCGTCACGTTCTACCGGCGAACCGGCCGGTGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGCGGGTTTGATACTGCTCATTCAGCTGCGAGAGCCTATGACAGGGCGGCTATAAAGTTTCGTGGAACAGAGGCAGACATAAATTTCAGCATTGAAGACTACGAGGAGGATTTGAAGCAGATGGGAAATTTGACTAAGGAAGAATTTGTACATGTTCTTCGTAGACAAAGCACGGGTTATCCGAGAGGAAGCTCGAAATTTAGAGGTGTAACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGCCAATTTTTAGGCAAAAAGTACGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCAAGAGCTTATGACAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGAATGAGCTTAGTACAACAGAATCATCATCAGGCAATGTCTTGGAACAGAATCTTGATTTGAGGTTGGGAAATTCAAGCTCAAAACAAAACACCCTTTCATTTGGGAATCATTGCCCAAATGTCACCAATAAAATTGATTTGCAAACTAAGGAATCTAACCCTCAGGAATCAAATATATTTGAGAATGATAATGGTAGAAGTTATAGTTTCCTTCAGACAGAGAAAATGCAGTTTCCTAGCGAACCGATCATTCGATCTCCACCCTCCATCGAAAGAACAATAAATGGATGCTTGGAGAGACCTGTGGAACTGCAGAATCTTCACAATTACTCTCCACACATCAATCAATCAAACTCTCAAATTCAGTTGTTAAGCAGCAGCAATGAAGGAGGGTTAGGAAGTGATGAACTTTCACTGTGTTTGAGTGAAGGCCACCAATGGCAGCAATCTGGTGGCTCTCAACAATTGGCAACTGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACTTCCCCTAATTGGTTGCAGAAAACTAATGGATGCTTCTTGGAGAGACCCTCTTGA 1458 47.67 MWDLNDSPDHGGTDEFEGLSSIDGDDDRAKWVGSINSNSSSSAVVMEDGSDADEASAGEGEPLVHRKNFSVTHPPATRQFFPLEDSNVGASSAAGGGSTTFPRARWVGVKFCQTEPVAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGTEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELSTTESSSGNVLEQNLDLRLGNSSSKQNTLSFGNHCPNVTNKIDLQTKESNPQESNIFENDNGRSYSFLQTEKMQFPSEPIIRSPPSIERTINGCLERPVELQNLHNYSPHINQSNSQIQLLSSSNEGGLGSDELSLCLSEGHQWQQSGGSQQLATAAASSGFPQLQISTSPNWLQKTNGCFLERPS 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26659016 26661775 - Lag0008625.1 Lac9g1138 620064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1138 485 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677(InterPro)
Lac9g1138 485 FunFam AP2-like ethylene-responsive transcription factor 141 200 - -
Lac9g1138 485 SMART rav1_2 234 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 SMART rav1_2 142 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 CDD AP2 142 197 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677(InterPro)
Lac9g1138 485 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 CDD AP2 233 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 FunFam AP2-like ethylene-responsive transcription factor 233 293 - -
Lac9g1138 485 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 MobiDBLite consensus disorder prediction 1 59 - -
Lac9g1138 485 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 MobiDBLite consensus disorder prediction 32 46 - -
Lac9g1138 485 Pfam AP2 domain 233 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 Pfam AP2 domain 142 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1138 485 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3053 Lac-Chr10:45026310 Lac9g1138 Lac-Chr9:26659016 3.00E-66 dispersed
Lac7g1808 Lac-Chr7:24719917 Lac9g1138 Lac-Chr9:26659016 4.70E-18 dispersed
Lac9g1138 Lac-Chr9:26659016 Lac9g2541 Lac-Chr9:44060890 5.20E-95 dispersed
Lac1g2583 Lac-Chr1:47196586 Lac9g1138 Lac-Chr9:26659016 6.90E-90 transposed
Lac8g1055 Lac-Chr8:21838413 Lac9g1138 Lac-Chr9:26659016 4.10E-09 transposed
Lac11g1732 Lac-Chr11:31411550 Lac9g1138 Lac-Chr9:26659016 2.60E-06 wgd
Lac8g1280 Lac-Chr8:27917084 Lac9g1138 Lac-Chr9:26659016 3.20E-08 wgd
Lac8g0535 Lac-Chr8:7699221 Lac9g1138 Lac-Chr9:26659016 2.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24406 PF00847 AP2 2.00E-09 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1138 K09284 - csv:101208665 767.303