Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac9g1143 | ATGAAAGGGGGAGAAGAACGGAAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCCTCGCCGCCGCCCGTGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCACACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCCAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGACCGGGTCGACCTCAATAAACTTCCCGACCCGGAAGACTCCGATGGCGACTGCGCTACCACTCATTGGACTAGTTGA | 501 | 60.08 | MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARLNFPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQTPSPSPVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHWTS | 166 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 26787981 | 26788481 | - | Lag0008630.1 | Lac9g1143 | 620069 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac9g1143 | 166 | Gene3D | AP2/ERF domain | 15 | 74 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | PRINTS | Ethylene responsive element binding protein signature | 55 | 75 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | SMART | rav1_2 | 16 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | Pfam | AP2 domain | 17 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | SUPERFAMILY | DNA-binding domain | 16 | 74 | IPR016177 | GO:0003677(InterPro) | |
Lac9g1143 | 166 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 73 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | MobiDBLite | consensus disorder prediction | 138 | 158 | - | - | |
Lac9g1143 | 166 | FunFam | Ethylene-responsive transcription factor 2 | 15 | 74 | - | - | |
Lac9g1143 | 166 | CDD | AP2 | 17 | 74 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Lac9g1143 | 166 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 7 | 157 | - | - | |
Lac9g1143 | 166 | MobiDBLite | consensus disorder prediction | 116 | 166 | - | - | |
Lac9g1143 | 166 | MobiDBLite | consensus disorder prediction | 116 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac1g2587 | Lac-Chr1:47233767 | Lac9g1143 | Lac-Chr9:26787981 | 3.00E-45 | dispersed | |
Lac2g0341 | Lac-Chr2:2553917 | Lac9g1143 | Lac-Chr9:26787981 | 4.10E-38 | dispersed | |
Lac2g0506 | Lac-Chr2:3731898 | Lac9g1143 | Lac-Chr9:26787981 | 8.60E-20 | dispersed | |
Lac6g0284 | Lac-Chr6:2305823 | Lac9g1143 | Lac-Chr9:26787981 | 1.60E-36 | dispersed | |
Lac8g1866 | Lac-Chr8:36935829 | Lac9g1143 | Lac-Chr9:26787981 | 5.20E-17 | dispersed | |
Lac8g3069 | Lac-Chr8:47397384 | Lac9g1143 | Lac-Chr9:26787981 | 4.90E-18 | dispersed | |
Lac9g1143 | Lac-Chr9:26787981 | Lac8g1669 | Lac-Chr8:34799204 | 3.30E-17 | dispersed | |
Lac4g0718 | Lac-Chr4:18010968 | Lac9g1143 | Lac-Chr9:26787981 | 9.10E-13 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24407 | PF00847 | AP2 | 7.40E-11 | CL0081 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac9g1143 | K09286 | - | csv:101209150 | 222.246 |