Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1143 ATGAAAGGGGGAGAAGAACGGAAGAAGAATCAGCAGAATCAAAAACCGTACAAAGGCATAAGGATGAGAAAATGGGGGAAATGGGTCGCCGAGATTCGTGAGCCCAACAAACGCTCTAGAATTTGGCTCGGTTCCTACTCCTCCCCCCTCGCCGCCGCCCGTGCCTACGACACCGCCGTCTTCCACCTCCGCGGCCCCTCCGCCCGCCTCAATTTTCCACACTTTTTCACCGCCGCCGACCGCCCCTTCCCCCTCCCCTCCGACATCTCCGCTGCCGCCGTCCGCAAGATCGCCGCCGAGGTCGGCGCCCGTGTCGACGCCCTCCAGACCTCCCTCCGCCACCACTTTCATACCTCTACAAACTCCGACCAAACTCCTTCCCCCTCGCCGGTGAAGCTTCGTTCTGATTCCGGTGGGTTTTCCGACCGGGTCGACCTCAATAAACTTCCCGACCCGGAAGACTCCGATGGCGACTGCGCTACCACTCATTGGACTAGTTGA 501 60.08 MKGGEERKKNQQNQKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPLAAARAYDTAVFHLRGPSARLNFPHFFTAADRPFPLPSDISAAAVRKIAAEVGARVDALQTSLRHHFHTSTNSDQTPSPSPVKLRSDSGGFSDRVDLNKLPDPEDSDGDCATTHWTS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 26787981 26788481 - Lag0008630.1 Lac9g1143 620069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1143 166 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 PRINTS Ethylene responsive element binding protein signature 55 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 SMART rav1_2 16 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 Pfam AP2 domain 17 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677(InterPro)
Lac9g1143 166 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 MobiDBLite consensus disorder prediction 138 158 - -
Lac9g1143 166 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Lac9g1143 166 CDD AP2 17 74 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac9g1143 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 7 157 - -
Lac9g1143 166 MobiDBLite consensus disorder prediction 116 166 - -
Lac9g1143 166 MobiDBLite consensus disorder prediction 116 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2587 Lac-Chr1:47233767 Lac9g1143 Lac-Chr9:26787981 3.00E-45 dispersed
Lac2g0341 Lac-Chr2:2553917 Lac9g1143 Lac-Chr9:26787981 4.10E-38 dispersed
Lac2g0506 Lac-Chr2:3731898 Lac9g1143 Lac-Chr9:26787981 8.60E-20 dispersed
Lac6g0284 Lac-Chr6:2305823 Lac9g1143 Lac-Chr9:26787981 1.60E-36 dispersed
Lac8g1866 Lac-Chr8:36935829 Lac9g1143 Lac-Chr9:26787981 5.20E-17 dispersed
Lac8g3069 Lac-Chr8:47397384 Lac9g1143 Lac-Chr9:26787981 4.90E-18 dispersed
Lac9g1143 Lac-Chr9:26787981 Lac8g1669 Lac-Chr8:34799204 3.30E-17 dispersed
Lac4g0718 Lac-Chr4:18010968 Lac9g1143 Lac-Chr9:26787981 9.10E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24407 PF00847 AP2 7.40E-11 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1143 K09286 - csv:101209150 222.246