Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1155 ATGGCCTGCCCAGCCAATGTCCACTCTCTTCAAAAAGCCCTAGCCATGGTCGACGGCATCAAACGAGCCCTCGTCGGTCTCGAGATCGAAGAAGCCAAAATCCTCTTCGATCCAAATTTGACCACTGAAGCCCTAATCCTCGCTGCAATCGACGATTCCGGCTTCGATGCCGAGCTCATCTCCGCCCCCAACAGACCCTACATTGTTCACATTAAACTCGATCGAGTTGCCTCTGCGGACATACCCGCCATTAGATCCTCTCTCGAGCAAGCCTCTGGAGTCAACTCTGTTGAAACGGACGCGCTAGGGCGGATGGTTACCATCGGCTATGACCCCGATCGGACTGGTCCGAGGTCTCTTTTGCAGTGCCTCGAGAGCTACGGGGCGAGCTTGTATGTGCCTCCCAAGAGAAGAGATGTGGAGCAGCGTCAAGAGGCTTGTGCTTACAGGAACTTGTTCTTGCTGAGCTGCTTGTTTTCTGTTCCTGTCGTGGCTTTTGCAATGGTGCTTCCTATGCTTCCCCCTTATGGGGATTGGTTGAATTACAGGGTTTGCAATATGCTTACTGTTGGAATGGTTCTTAAATGGATCTTCTGCACACCAGTCCAGTTCCTAGCTGGCCAGAGATTTTATGTAGGATCATACCGTGCATTACAAAAGAAATCTGCCAACATGGATGTTTTGGTTGCGGTAGGCACCAATGCAGCTTACTTTTACTCAGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAAGGGAAAGATTTCTTTGAGACCAGCTCCATGTTGATCTCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGGAAATCGTCAGATGCTTTAGCAGAGCTGGCTCATCTTGCTCCTCATACAGCTTGTTTGATGACCTTCGATGATCATGGAAATTTGCTATCAGAGATGGAGATTGATACCCAGCTGATACAGAGGAATGATATAATTAAGATTGTTCCTGGGGCAAAAGTTCCTGTTGATGGGATTGTTATTAGTGGTGAAAGCAATGTGAATGAGAGTACAATTACCGGAGAAGCAAGATCCATTGAGAAAACACCCGGTGACAAGGTTATTGGGGGGACCGTCAATGAAAATGGATGCTTATTTGTTAAGACCACTCATGTTGGATCTGATACTACACTTTCTCGAATTGTACAACTCGTGGAATCAGCTCAGCTATCACGAGCACCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTTTTTGTTCCTGTTGTTGTTGTAGCAGCATTTGTGACATGGCTTGGATGGTTAATCTGTGGAGAAGTTGGGCTATACCCTAAACATTGGATACCAAAAGGCATGGATGAGTTTGAACTTGCACTGCAGTTTAGCATTTCAGTGCTGGTGATCGCATGCCCATGTGCTCTTGGTTTAGCAACGCCAACTGCAATCATGGTTGCATCAGGGAAGGGTGCTTCTCTAGGTGTGCTCATTAAGGGAGCAAGTGCCCTTCAAAATGCATATAAGGTGAAAATGGTAGTTTTTGACAAGACTGGAACTCTAACTGTTGGCAGGCCAGAGGTAGTTAGTGTTGTGCTTTTTTCTACATTTCCAATGCAGGAGCTCTGTGATGTAGCAATAGCAATTGAGTCAAACAGTAAACACCCTTTAGCAAGATCTGTAGTGGAGCATGCAAAGAAAATGAGAAGGAAGTTTGGGGCTCGAACCGAATGTCGCAAACGCATCCAGAACTTTGAGGTCTTTCCAGGAGGAGGGGTTGGAGGAAGAATTGATAGAAAGCCAGTTTTAGTAGGGAACAGAAGGCTCATGCGAGCTCACAACATTGTTGTTGGTCCTCAAGTTGATCGGTATGTTATAGAAAATGAGAGGCTGGCTCAAACATGTGTCTTAGTGGCTATTAATGGCAGGGTAGCAGGAGGTTTTGGTGTTGTAGATGCGCCAAAGCCTGGGACGAAAGCTGTTATATCGTTTCTTCGCTCAATCGGCATCTCAAGCATAATGGTCACTGGCGATAACTGGGCCACAGCATTTGCCGTTGCAAGAGGAGTTGGGATTAATGAGGTCTTTGCAGAGATGGATCCAATTGGAAAAGCTAACAAGATTAAATCCTTGAAGACAACAGGGAATATTGTAGCAATGGTGGGAGATGGAGTAAATGACTCACATGCCTTAGCTGCAGCTGATGTTGGCATTGCCATTGGTGCTGGAACAAATATTGCTATAGAAGCAGCTGATATAGTTCTCATGCGAAGCAATTTAGAAGATGTAGTCACAGCCATAGATCTCTCAAGACAAACTGTTTATCGTATATGGCTTAACTACATCTGGGCACTTGGCTATAATATCATCGGTATGCCTATTGCTGCCGGAATCCTATATCCCTTCACTGGAATCCGATTGCCGCCGTGGCTCGCCGGTGCCTGCATGGCTGCTTCCTCCCTTAGTGTCGTATGTTCTTCTCTCTTATTGAAATGTTATAGGAGACCTTTGAATTTTCAATCCACTTAG 2523 45.46 MACPANVHSLQKALAMVDGIKRALVGLEIEEAKILFDPNLTTEALILAAIDDSGFDAELISAPNRPYIVHIKLDRVASADIPAIRSSLEQASGVNSVETDALGRMVTIGYDPDRTGPRSLLQCLESYGASLYVPPKRRDVEQRQEACAYRNLFLLSCLFSVPVVAFAMVLPMLPPYGDWLNYRVCNMLTVGMVLKWIFCTPVQFLAGQRFYVGSYRALQKKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSMLISFILLGKYLEVMAKGKSSDALAELAHLAPHTACLMTFDDHGNLLSEMEIDTQLIQRNDIIKIVPGAKVPVDGIVISGESNVNESTITGEARSIEKTPGDKVIGGTVNENGCLFVKTTHVGSDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAAFVTWLGWLICGEVGLYPKHWIPKGMDEFELALQFSISVLVIACPCALGLATPTAIMVASGKGASLGVLIKGASALQNAYKVKMVVFDKTGTLTVGRPEVVSVVLFSTFPMQELCDVAIAIESNSKHPLARSVVEHAKKMRRKFGARTECRKRIQNFEVFPGGGVGGRIDRKPVLVGNRRLMRAHNIVVGPQVDRYVIENERLAQTCVLVAINGRVAGGFGVVDAPKPGTKAVISFLRSIGISSIMVTGDNWATAFAVARGVGINEVFAEMDPIGKANKIKSLKTTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFTGIRLPPWLAGACMAASSLSVVCSSLLLKCYRRPLNFQST 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27066782 27072507 + Lag0008642.1 Lac9g1155 620081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1155 840 Gene3D - 1 62 - -
Lac9g1155 840 FunFam Copper-transporting ATPase 1, putative 280 402 - -
Lac9g1155 840 Pfam E1-E2 ATPase 311 490 - -
Lac9g1155 840 SUPERFAMILY HMA, heavy metal-associated domain 1 64 IPR036163 GO:0046872(InterPro)
Lac9g1155 840 SUPERFAMILY Calcium ATPase, transduction domain A 312 398 IPR008250 -
Lac9g1155 840 CDD P-type_ATPase_Cu-like 153 815 - -
Lac9g1155 840 Pfam haloacid dehalogenase-like hydrolase 508 733 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 421 435 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 210 229 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 792 806 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 262 281 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 282 300 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase signature 696 713 - -
Lac9g1155 840 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 1 836 - -
Lac9g1155 840 ProSiteProfiles Heavy-metal-associated domain profile. 1 58 IPR006121 GO:0046872(InterPro)
Lac9g1155 840 Gene3D - 599 650 IPR023299 GO:0000166(InterPro)
Lac9g1155 840 Gene3D - 519 598 IPR023299 GO:0000166(InterPro)
Lac9g1155 840 NCBIfam heavy metal translocating P-type ATPase 225 828 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Lac9g1155 840 SFLD C1.7: P-type atpase like 494 771 - -
Lac9g1155 840 SUPERFAMILY HMA, heavy metal-associated domain 81 133 IPR036163 GO:0046872(InterPro)
Lac9g1155 840 NCBIfam HAD-IC family P-type ATPase 265 550 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac9g1155 840 NCBIfam HAD-IC family P-type ATPase 626 796 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Lac9g1155 840 SUPERFAMILY HAD-like 510 825 IPR036412 -
Lac9g1155 840 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase 1 signature 208 233 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Lac9g1155 840 PRINTS Copper-transporting ATPase 1 signature 188 208 - -
Lac9g1155 840 SUPERFAMILY Calcium ATPase, transmembrane domain M 260 506 IPR023298 -
Lac9g1155 840 FunFam Probable copper-transporting ATPase HMA5 644 776 - -
Lac9g1155 840 ProSitePatterns E1-E2 ATPases phosphorylation site. 514 520 IPR018303 -
Lac9g1155 840 CDD HMA 1 58 IPR006121 GO:0046872(InterPro)
Lac9g1155 840 Gene3D - 280 402 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 644 655 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 742 754 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 666 676 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 512 526 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 348 362 - -
Lac9g1155 840 PRINTS P-type cation-transporting ATPase superfamily signature 719 738 - -
Lac9g1155 840 SFLD p-type atpase 494 771 IPR044492 -
Lac9g1155 840 Gene3D - 479 775 IPR023214 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g1655 Lac-Chr1:37869389 Lac9g1155 Lac-Chr9:27066782 4.50E-247 dispersed
Lac1g3643 Lac-Chr1:55535457 Lac9g1155 Lac-Chr9:27066782 5.00E-193 dispersed
Lac3g0340 Lac-Chr3:2489555 Lac9g1155 Lac-Chr9:27066782 1.00E-65 dispersed
Lac5g2704 Lac-Chr5:45499992 Lac9g1155 Lac-Chr9:27066782 1.00E-98 dispersed
Lac8g2014 Lac-Chr8:38602625 Lac9g1155 Lac-Chr9:27066782 4.20E-17 dispersed
Lac9g1155 Lac-Chr9:27066782 Lac9g1422 Lac-Chr9:32120529 5.90E-38 dispersed
Lac9g1155 Lac-Chr9:27066782 Lac6g2287 Lac-Chr6:40109952 5.50E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1155 K17686 - csv:101214276 1417.52