Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1195 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCATCGACTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTCAATCTATTGAGGCCAATACTGGATGCAGTTGTTGATTTAGATATAGCTTCTGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTTGAAAACTGGCAACCCTTGTCGAGTAAAGTATACTTTGTGCTGCAAAGTGAAGCATTGATAACAAAGATTGGGAAATCTAGCCTGGATATATTCCAACTTCTTCAGTTTTCTAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGGATCAAGTAGAGGGTATTGCACCTAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCGGAGGACATTGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGCCCTGTATCAATACCTGCTGATTTCTGCTGTCCACTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGGATTTTTATAAAAAATTGGATTGATCTGGGGCTCAATGTTTGCCCAAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTTAGTGAACTTAAACAAGCTTTCGCCCCTTCTTGTTGGGAGCTTTGAGTCTGATACCCATCGAGAACCCCTTTTTCCTCATTCTCCTGGCTACCAACCGATTTCCCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTCAGTGGAACTCATCGAGATGGAAATTCTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGATTATTGCTTACAAGTTCGGAAGATCGAATGACCAAATTGGAAGAAAATGGTTGTGAATTGGTTGCTAAACCATCTATGTCACCTTCTAGAACTAATGTTCCAAATACCAGTGAGGATGAACCGTCACATAGTCATAATAGGACGGCCTCCACCTCTAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACTTCAGGGGAAGCCAATGAAGCTTCACAGTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTTCCAACCACAGAGAACCAGAGCTTCCAGCCAGACTAGCTGACTCCAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATTACATCATCTGCTAATGAGACGAGGCCAGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTTGAGGAATTGAAGAGCAGTTCACTCGAAACTTTAAGAGGTGCTACAGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGAATATTTGGTTAATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAACGCTGTGACAGCACTTCTGAACTTATCTATCAATGACAATAACAAAAGTGCCATTGCCCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAAGATGCAGCCACAGCTTTGTTTAATCTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCTGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCTGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGCATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAGAAGGCCCAAGCACTTCTTAGCCATTTCAGAAGCCAGAGACATGGCAATTCGGGAAGAGGGTAA 2514 43.52 MGVSLLKVLLRHISSFLQLSSTDYINLQPTLKYYHKIEGVFNLLRPILDAVVDLDIASDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALITKIGKSSLDIFQLLQFSNENLPEELSSTSLEHCVQKIKHIGKEEISSVIKDAIRDQVEGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERIFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRLVNLNKLSPLLVGSFESDTHREPLFPHSPGYQPISPQSTRSAGSGKNLNSLSGTHRDGNSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSSEDRMTKLEENGCELVAKPSMSPSRTNVPNTSEDEPSHSHNRTASTSSAVSNANLSRGTSGEANEASQLSTNLTGYGSDAAGESKSEPLAAATSTSNHREPELPARLADSRSRGNTMWLRPSERFATRIITSSANETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVNLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27883910 27888395 + Lag0008682.1 Lac9g1195 620121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 717 758 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Coils Coil 179 209 - -
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 CDD RING-Ubox_PUB 237 289 IPR045210 -
Lac9g1195 837 Gene3D - 532 833 IPR011989 -
Lac9g1195 837 MobiDBLite consensus disorder prediction 337 393 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 447 485 - -
Lac9g1195 837 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 718 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SUPERFAMILY ARM repeat 553 826 IPR016024 -
Lac9g1195 837 SMART arm_5 706 745 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 624 664 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 583 623 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 665 705 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 788 828 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 746 786 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 PANTHER U BOX DOMAIN-CONTAINING 30 830 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 346 386 - -
Lac9g1195 837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 317 IPR013083 -
Lac9g1195 837 SUPERFAMILY RING/U-box 224 312 - -
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 667 704 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 624 663 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 585 622 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 FunFam RING-type E3 ubiquitin transferase 537 832 - -
Lac9g1195 837 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 MobiDBLite consensus disorder prediction 417 519 - -
Lac9g1195 837 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 426 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1195 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2622 Lac-Chr1:47575691 Lac9g1195 Lac-Chr9:27883910 1.10E-45 dispersed
Lac1g2623 Lac-Chr1:47582244 Lac9g1195 Lac-Chr9:27883910 1.10E-24 dispersed
Lac4g2166 Lac-Chr4:41312589 Lac9g1195 Lac-Chr9:27883910 6.80E-74 dispersed
Lac9g1195 Lac-Chr9:27883910 Lac9g1894 Lac-Chr9:38710060 3.30E-25 dispersed
Lac9g1195 Lac-Chr9:27883910 Lac8g1555 Lac-Chr8:33211156 6.30E-24 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
Lac8g0902 . 1 1040 U-box Gene Family AT5G15400 77.0 0.0e+00 1593.9
Lac9g1195 . 196 837 U-box Gene Family AT2G23140 65.9 2.5e-121 433.7
Lac6g0745 . 1 773 U-box Gene Family AT1G24330 59.6 9.6e-245 844.0
Lac13g0067 . 1 586 U-box Gene Family AT1G24330 66.6 6.7e-214 741.5
Lac6g0745 . 1 772 U-box Gene Family AT1G67530 60.0 5.4e-243 838.2
Lac13g0067 . 1 586 U-box Gene Family AT1G67530 66.3 6.6e-209 724.9
Lac1g3266 . 1 362 U-box Gene Family AT4G21350 63.4 8.5e-122 434.5
Lac13g1443 . 260 455 U-box Gene Family AT1G71020 68.7 7.2e-73 272.3
Lac8g1555 . 271 469 U-box Gene Family AT1G71020 53.7 4.8e-53 206.5
Lac13g0683 . 214 417 U-box Gene Family AT1G71020 53.1 9.5e-49 192.2
Lac7g2706 . 258 427 U-box Gene Family AT1G71020 57.8 1.4e-47 188.3
Lac9g2481 . 256 405 U-box Gene Family AT1G71020 56.1 8.6e-42 169.1
Lac13g1443 . 16 659 U-box Gene Family AT1G23030 57.0 7.2e-110 395.6
Lac7g2706 . 93 632 U-box Gene Family AT2G28830 59.9 8.9e-102 368.6
Lac9g2481 . 93 409 U-box Gene Family AT2G28830 52.6 4.3e-80 296.6
Lac7g2706 . 1 634 U-box Gene Family AT3G46510 70.3 2.5e-169 593.2
Lac9g2481 . 3 407 U-box Gene Family AT3G46510 58.8 4.2e-124 443.0
Lac13g0683 . 9 624 U-box Gene Family AT3G46510 58.9 8.8e-122 435.3
Lac13g0683 . 1 626 U-box Gene Family AT3G54850 68.9 5.1e-167 585.5
Lac7g2706 . 8 627 U-box Gene Family AT3G54850 55.6 8.8e-103 372.1
Lac9g1894 . 97 649 U-box Gene Family AT5G42340 65.1 3.8e-125 446.4
Lac1g1790 . 9 672 U-box Gene Family AT5G01830 56.5 4.0e-194 675.6
Lac10g0984 . 1 714 U-box Gene Family AT1G29340 64.4 1.0e-251 867.1
Lac11g0229 . 27 442 U-box Gene Family AT5G37490 50.8 1.1e-109 394.4
Lac1g1729 . 10 421 U-box Gene Family AT3G52450 53.5 3.5e-119 426.0
Lac10g2755 . 2 407 U-box Gene Family AT3G52450 50.1 2.5e-117 419.9
Lac3g1540 . 3 135 U-box Gene Family AT3G52450 60.9 2.3e-41 167.5
Lac10g2755 . 2 406 U-box Gene Family AT2G35930 52.7 1.3e-118 424.1
Lac9g2738 . 5 406 U-box Gene Family AT2G35930 52.1 6.3e-118 421.8
Lac1g1729 . 9 421 U-box Gene Family AT2G35930 50.8 5.5e-114 408.7
Lac3g1540 . 3 135 U-box Gene Family AT2G35930 57.9 8.1e-41 165.6
Lac5g2555 . 7 428 U-box Gene Family AT3G19380 63.9 8.6e-147 517.7
Lac5g2555 . 1 428 U-box Gene Family AT1G49780 63.4 1.4e-149 526.9
Lac1g2397 . 1 411 U-box Gene Family AT5G64660 53.8 9.0e-120 427.9
Lac1g2397 . 1 411 U-box Gene Family AT5G09800 51.1 6.7e-104 375.2
Lac2g0412 . 1 453 U-box Gene Family AT3G49810 65.1 1.6e-159 560.1
Lac6g0235 . 1 452 U-box Gene Family AT3G49810 63.3 3.5e-154 542.3
Lac2g0412 . 1 453 U-box Gene Family AT5G65920 63.8 7.7e-154 541.2
Lac6g0235 . 1 452 U-box Gene Family AT5G65920 63.8 1.1e-152 537.3
Lac7g0234 . 1 875 U-box Gene Family AT2G45910 52.1 1.4e-233 807.0
Lac6g3081 . 4 726 U-box Gene Family AT2G19410 51.1 2.8e-215 746.1
Lac11g1756 . 25 808 U-box Gene Family AT4G25160 54.9 4.9e-226 781.9
Lac8g2617 . 39 549 U-box Gene Family AT5G40140 56.0 2.6e-95 347.1
Lac3g0670 . 28 541 U-box Gene Family AT5G40140 50.7 1.5e-69 261.5
Lac10g0421 . 29 494 U-box Gene Family AT5G40140 50.9 1.0e-54 212.2
Lac6g0084 . 45 853 U-box Gene Family AT1G76390 62.2 8.5e-276 947.2
Lac6g0084 . 54 853 U-box Gene Family AT1G20780 62.5 5.1e-281 964.5
Lac6g0745 . 1 775 U-box Gene Family AT1G27910 63.2 3.3e-269 925.2
Lac13g0067 . 1 767 U-box Gene Family AT1G27910 54.4 6.7e-214 741.5
Lac1g2663 . 1 593 U-box Gene Family AT5G67530 75.9 1.6e-263 906.0
Lac7g0310 . 3 157 U-box Gene Family AT5G67530 53.5 2.7e-45 181.0
Lac10g2836 . 12 156 U-box Gene Family AT5G67530 50.3 2.5e-38 157.9
Lac1g2774 . 65 860 U-box Gene Family AT5G65500 50.9 2.6e-213 739.6
Lac7g0542 . 1 516 U-box Gene Family AT1G04510 75.0 1.1e-223 773.5
Lac7g0542 . 1 485 U-box Gene Family AT2G33340 73.9 1.1e-209 726.9
Lac11g2492 . 5 278 U-box Gene Family AT3G07370 65.7 7.3e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42