Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1195 ATGGGGGTATCATTACTTAAAGTGCTTCTTAGACATATTTCATCATTTCTTCAACTTTCATCGACTGACTACATAAATTTACAACCAACTCTGAAGTACTACCATAAAATAGAAGGGGTCTTCAATCTATTGAGGCCAATACTGGATGCAGTTGTTGATTTAGATATAGCTTCTGATGAAGAGCTTACTAAGGCATTTGAAGAACTTGATCATTCAGTGGATGAACTAAGGGTGCTCTTTGAAAACTGGCAACCCTTGTCGAGTAAAGTATACTTTGTGCTGCAAAGTGAAGCATTGATAACAAAGATTGGGAAATCTAGCCTGGATATATTCCAACTTCTTCAGTTTTCTAATGAAAATCTTCCGGAGGAATTGAGTTCAACATCTCTTGAGCACTGTGTCCAAAAAATTAAGCATATTGGAAAGGAAGAAATATCTTCTGTTATTAAAGATGCCATAAGGGATCAAGTAGAGGGTATTGCACCTAGCTCAGATGTTTTGGTGAAACTTGCGGATTCCCTGAGCTTGAGATCAAATCAGGAGATTTTAATTGAGGCTGTGGCCCTTGAAAAGTTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGGAGAAGCGGAGGACATTGATCAAATGGTTGCTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAATCCCAAAGTTCTAGCCCTGTATCAATACCTGCTGATTTCTGCTGTCCACTTTCTCTCGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGGATTTTTATAAAAAATTGGATTGATCTGGGGCTCAATGTTTGCCCAAAGACTAGACAGACATTGGTTCACACGAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGAGACAAACAATGTGAAATTGTCTGATCCCTCAAGGTTAGTGAACTTAAACAAGCTTTCGCCCCTTCTTGTTGGGAGCTTTGAGTCTGATACCCATCGAGAACCCCTTTTTCCTCATTCTCCTGGCTACCAACCGATTTCCCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAACTTGAACTCACTCAGTGGAACTCATCGAGATGGAAATTCTTCTTTGCTCTCCCATTCTTTCTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAAGAGGGATTGATGTTAGTAGATTATTGCTTACAAGTTCGGAAGATCGAATGACCAAATTGGAAGAAAATGGTTGTGAATTGGTTGCTAAACCATCTATGTCACCTTCTAGAACTAATGTTCCAAATACCAGTGAGGATGAACCGTCACATAGTCATAATAGGACGGCCTCCACCTCTAGTGCAGTCTCAAATGCTAATCTCTCTCGAGGAACTTCAGGGGAAGCCAATGAAGCTTCACAGTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCTCGACTTCCAACCACAGAGAACCAGAGCTTCCAGCCAGACTAGCTGACTCCAGATCTCGAGGTAATACGATGTGGCTCCGGCCATCAGAGAGGTTTGCCACTAGAATAATTACATCATCTGCTAATGAGACGAGGCCAGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTTGAGGAATTGAAGAGCAGTTCACTCGAAACTTTAAGAGGTGCTACAGCTGAATTGCGGCTACTGGCCAAACATAATATGGATAACCGGATAGTGATTGCTCAATGTGGGGCCATTGAATATTTGGTTAATTTGCTCCTCTCTGCAGACTCGAAGATCCAGGAGAACGCTGTGACAGCACTTCTGAACTTATCTATCAATGACAATAACAAAAGTGCCATTGCCCAGGCAAATGCAATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAGGCAAAGGAGAACTCAGCAGCAACACTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTGTTGGGTAATGGAACTCCAAGGGGAAAGAAAGATGCAGCCACAGCTTTGTTTAATCTGTCAATATTCCATGAGAACAAGGCTAGAATTGTACAAGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCTGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCGATTGGTCAGGAAGGTGGAATTCCCGTTCTGGTCGAGGTTGTCGAGTTGGGTTCTGCGAGAGGAAAGGAAAATGCAGCTGCAGCATTGTTGCAGCTTTGCACAACAAGCAGTAGGCATTGCAGCATGGTGCTCCAAGAAGGAGCCGTGCCACCATTAGTGGCATTGTCTCAATCTGGCACTGCTAGAGCCAAAGAGAAGGCCCAAGCACTTCTTAGCCATTTCAGAAGCCAGAGACATGGCAATTCGGGAAGAGGGTAA 2514 43.52 MGVSLLKVLLRHISSFLQLSSTDYINLQPTLKYYHKIEGVFNLLRPILDAVVDLDIASDEELTKAFEELDHSVDELRVLFENWQPLSSKVYFVLQSEALITKIGKSSLDIFQLLQFSNENLPEELSSTSLEHCVQKIKHIGKEEISSVIKDAIRDQVEGIAPSSDVLVKLADSLSLRSNQEILIEAVALEKLKESAEQAENTGEAEDIDQMVALVTRMHERLIMIKQSQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERIFIKNWIDLGLNVCPKTRQTLVHTNLIPNYTVKALIANWCETNNVKLSDPSRLVNLNKLSPLLVGSFESDTHREPLFPHSPGYQPISPQSTRSAGSGKNLNSLSGTHRDGNSSLLSHSFSEDSLSNDAGDERGIDVSRLLLTSSEDRMTKLEENGCELVAKPSMSPSRTNVPNTSEDEPSHSHNRTASTSSAVSNANLSRGTSGEANEASQLSTNLTGYGSDAAGESKSEPLAAATSTSNHREPELPARLADSRSRGNTMWLRPSERFATRIITSSANETRPDLSAIEAQVQKVVEELKSSSLETLRGATAELRLLAKHNMDNRIVIAQCGAIEYLVNLLLSADSKIQENAVTALLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSSRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 27883910 27888395 + Lag0008682.1 Lac9g1195 620121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 717 758 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Coils Coil 179 209 - -
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 594 636 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 CDD RING-Ubox_PUB 237 289 IPR045210 -
Lac9g1195 837 Gene3D - 532 833 IPR011989 -
Lac9g1195 837 MobiDBLite consensus disorder prediction 337 393 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 447 485 - -
Lac9g1195 837 SMART Ubox_2 239 302 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 676 718 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SUPERFAMILY ARM repeat 553 826 IPR016024 -
Lac9g1195 837 SMART arm_5 706 745 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 624 664 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 583 623 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 665 705 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 788 828 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 SMART arm_5 746 786 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 PANTHER U BOX DOMAIN-CONTAINING 30 830 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 346 386 - -
Lac9g1195 837 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 317 IPR013083 -
Lac9g1195 837 SUPERFAMILY RING/U-box 224 312 - -
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 667 704 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 624 663 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 Pfam Armadillo/beta-catenin-like repeat 585 622 IPR000225 GO:0005515(InterPro)
Lac9g1195 837 FunFam RING-type E3 ubiquitin transferase 537 832 - -
Lac9g1195 837 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 MobiDBLite consensus disorder prediction 417 519 - -
Lac9g1195 837 Pfam U-box domain 236 306 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lac9g1195 837 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Lac9g1195 837 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac1g2622 Lac-Chr1:47575691 Lac9g1195 Lac-Chr9:27883910 1.10E-45 dispersed
Lac1g2623 Lac-Chr1:47582244 Lac9g1195 Lac-Chr9:27883910 1.10E-24 dispersed
Lac4g2166 Lac-Chr4:41312589 Lac9g1195 Lac-Chr9:27883910 6.80E-74 dispersed
Lac9g1195 Lac-Chr9:27883910 Lac9g1894 Lac-Chr9:38710060 3.30E-25 dispersed
Lac9g1195 Lac-Chr9:27883910 Lac8g1555 Lac-Chr8:33211156 6.30E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1195 - - - 0.0