Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac9g1232 | ATGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTGCTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGATTTCATCTTATGTGAAAGAAAAGAAGATGGCTAAAAAGAGAATGAATCATGGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATCCTGAAAGTGGAAAAGGCAAGAAGGGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGACAGACCTCCAGATGGTGTTGTTCCTCGTCTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCGAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAATCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTAGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTTGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATACGCAGCTGTAAAATTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATACTCTCTGGAGGGTCATGTGAAGATGTCATTGAATCAATACACGACTCTCTTCTGAAGATACAAGAGGATATGAGGAAAGGACAAGTTGCACTTGAGAAATATATCATCACGAAGACCTTGACTAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACACGTTCAAGTTGCACAAAGGTTAAGACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCATCTTCCCTCTTGTGTTCCGTAAATGATGAGGAAAGGTATCAGGGCTGTTTACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTGAGTGTCCTGCTATCTTCAATTCTATATACAAATCTACACATGGAAAGCAAGAAAGGCCAGTTGATGAACCTACAAGAAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCAATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAACATGCCACACGTGCTGTCAGTCTTCGACTTAAGGGCAACTCTGAGAAAGGAACCATCTGCCCAAACTATCCTAACTGCAACGGGCGTCTAATAAGAAAGTACACGGAAGCGGATCTGTACAAGCAGCTTGCATATTTTAGTTACATTTTGGATACCGTACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCAAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGAGAACGCAGTGCATATGGTTGGTTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA | 2040 | 41.03 | MIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMAKKRMNHGSEEKNVDEFDLDDANVEAPNPESGKGKKGLYPSIIQEYNICFTTVDRPPDGVVPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDISKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLLKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLRQMGYSTGCSVGDTIPYIICCEQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSVNDEERYQGCLPLTLTCPSCSGTFECPAIFNSIYKSTHGKQERPVDEPTRKFWNNLHCPKCPDEANAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKHATRAVSLRLKGNSEKGTICPNYPNCNGRLIRKYTEADLYKQLAYFSYILDTVRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRERSAYGWLQLQDFVVTV | 679 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 28643132 | 28649634 | - | Lag0008719.1 | Lac9g1232 | 620158 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac9g1232 | 679 | Coils | Coil | 263 | 283 | - | - | |
| Lac9g1232 | 679 | ProSitePatterns | DNA polymerase family B signature. | 237 | 245 | IPR017964 | GO:0000166(InterPro)|GO:0003676(InterPro) | |
| Lac9g1232 | 679 | Pfam | DNA polymerase family B | 36 | 421 | IPR006134 | GO:0000166(InterPro)|GO:0003677(InterPro) | |
| Lac9g1232 | 679 | SUPERFAMILY | Ribonuclease H-like | 1 | 64 | IPR012337 | - | |
| Lac9g1232 | 679 | Gene3D | Palm domain of DNA polymerase | 111 | 299 | IPR023211 | - | |
| Lac9g1232 | 679 | SUPERFAMILY | DNA/RNA polymerases | 112 | 447 | IPR043502 | - | |
| Lac9g1232 | 679 | Gene3D | - | 1 | 92 | IPR036397 | GO:0003676(InterPro) | |
| Lac9g1232 | 679 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 114 | 419 | - | GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER) | |
| Lac9g1232 | 679 | PRINTS | DNA-directed DNA-polymerase family B signature | 182 | 194 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac9g1232 | 679 | PRINTS | DNA-directed DNA-polymerase family B signature | 235 | 243 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac9g1232 | 679 | Gene3D | DNA Polymerase alpha, zinc finger | 470 | 664 | IPR038256 | - | |
| Lac9g1232 | 679 | SMART | polmehr3 | 1 | 249 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
| Lac9g1232 | 679 | Gene3D | Helix hairpin bin | 152 | 195 | - | - | |
| Lac9g1232 | 679 | FunFam | DNA polymerase | 147 | 196 | - | - | |
| Lac9g1232 | 679 | Gene3D | - | 419 | 461 | IPR042087 | - | |
| Lac9g1232 | 679 | Pfam | DNA Polymerase alpha zinc finger | 471 | 675 | IPR015088 | GO:0003887(InterPro)|GO:0006260(InterPro) | |
| Lac9g1232 | 679 | CDD | POLBc_alpha | 114 | 447 | IPR045846 | GO:0003887(InterPro)|GO:1902975(InterPro) | |
| Lac9g1232 | 679 | NCBIfam | DNA polymerase (pol2) | 5 | 419 | - | - | |
| Lac9g1232 | 679 | FunFam | DNA polymerase | 470 | 665 | - | - | |
| Lac9g1232 | 679 | Gene3D | - | 313 | 418 | IPR042087 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac9g1232 | K02320 | - | csv:101211201 | 1202.19 |