Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1232 ATGATTGAATATGGTGAGACAGATGCATGGTTGTCATTGGAACTCATGTTTCATTTAAGTGTTCTTCCCCTTACTCGTCAGTTGACTAATATCAGTGGTAATCTCTGGGGAAGAAGTCTACAGGGTGCTAGAGCCCAGAGAGTAGAGTATCTCTTGCTTCATGCATTCCATGCCAAAAAATATATTGTCCCCGACAAGATTTCATCTTATGTGAAAGAAAAGAAGATGGCTAAAAAGAGAATGAATCATGGTTCTGAGGAAAAAAATGTTGATGAATTTGATTTAGATGATGCAAATGTAGAAGCTCCCAATCCTGAAAGTGGAAAAGGCAAGAAGGGTCTGTACCCTTCCATCATTCAGGAATATAATATTTGCTTCACCACTGTTGACAGACCTCCAGATGGTGTTGTTCCTCGTCTGCCATCTAGTAAAGTCACTGGAGTTCTTCCTGAGTTGCTAAAAAATCTGGTTCAGAGGAGAAGAATGGTGAAGTCATGGATGAAGAATGCATCTGGTCTCAAGCTCCAGCAACTTGACATTCAGCAGCAGGCACTAAAGCTCACTGCAAACAGTATGTATGGATGCCTAGGGTTTTCTAATTCGAGGTTTTATGCAAAACCACTGGCAGAGCTTATTACTTCACAAGGAAGAGAAATACTGCAGAGCACTGTTGATCTTGTGCAGAATAATCTGAATCTAGAGGTAATTTATGGTGATACTGATTCAATAATGATTCATAGTGGACTGGATGATATTAGCAAAGTGAAAGCAATTGCAGGAAAAGTTATACAAGAGGTCAACAAAAAGTACAAGTGTTTAGAAATTGATCTTGATGGTTTGTATAAGAGAATGTTGCTTCTGAAGAAAAAGAAATACGCAGCTGTAAAATTGCAGTTCAAGGATGGAACGCCATATGAGGTTATTGAGCGTAAGGGTCTTGATATGGTTCGTCGTGACTGGAGCTTATTGTCAAAGGAATTAGGTGATTTCTGCTTGAGTCAAATACTCTCTGGAGGGTCATGTGAAGATGTCATTGAATCAATACACGACTCTCTTCTGAAGATACAAGAGGATATGAGGAAAGGACAAGTTGCACTTGAGAAATATATCATCACGAAGACCTTGACTAAGCCACCTGAAGCCTATCCTGATGCCAGAAACCAACCACACGTTCAAGTTGCACAAAGGTTAAGACAAATGGGCTATTCAACTGGCTGTTCTGTTGGTGATACGATCCCATATATAATTTGCTGTGAGCAGATTCACCCTGTGGTTTCTCGTCTATGTGCCTCAATTCAGGGCACTAGCCCAGAACGCTTGGCTGACTGTCTGGGGCTTGATTCATCGAAGTTTCAAAACAAATCAAGTGAAGTTTCCCGAAGTGATGTCTCATCTTCCCTCTTGTGTTCCGTAAATGATGAGGAAAGGTATCAGGGCTGTTTACCACTGACATTAACTTGCCCCAGCTGTTCTGGTACTTTTGAGTGTCCTGCTATCTTCAATTCTATATACAAATCTACACATGGAAAGCAAGAAAGGCCAGTTGATGAACCTACAAGAAAATTTTGGAATAATTTGCATTGTCCAAAATGTCCTGACGAAGCTAATGCGGGTAGAATGACTCCTGGAATGATTGCCAACCAGGTAAAAAGGCAAGCAGAGAGGTTCATTTCAATGTATTATAATGGCTTACTGATGTGTGAGGATGAAACCTGCAAACATGCCACACGTGCTGTCAGTCTTCGACTTAAGGGCAACTCTGAGAAAGGAACCATCTGCCCAAACTATCCTAACTGCAACGGGCGTCTAATAAGAAAGTACACGGAAGCGGATCTGTACAAGCAGCTTGCATATTTTAGTTACATTTTGGATACCGTACGCTGTATGGAAAAGTTGGAGGTTCATGCAAGGGTAACTTTAGAGAAAGAAATGGCAAAAATTCGGCCAATAGTCGAGTTAGCTGCATCGACAATTCAAAGCATTCGAGAACGCAGTGCATATGGTTGGTTGCAGTTGCAGGATTTTGTAGTTACAGTTTGA 2040 41.03 MIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKISSYVKEKKMAKKRMNHGSEEKNVDEFDLDDANVEAPNPESGKGKKGLYPSIIQEYNICFTTVDRPPDGVVPRLPSSKVTGVLPELLKNLVQRRRMVKSWMKNASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIHSGLDDISKVKAIAGKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVIERKGLDMVRRDWSLLSKELGDFCLSQILSGGSCEDVIESIHDSLLKIQEDMRKGQVALEKYIITKTLTKPPEAYPDARNQPHVQVAQRLRQMGYSTGCSVGDTIPYIICCEQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQNKSSEVSRSDVSSSLLCSVNDEERYQGCLPLTLTCPSCSGTFECPAIFNSIYKSTHGKQERPVDEPTRKFWNNLHCPKCPDEANAGRMTPGMIANQVKRQAERFISMYYNGLLMCEDETCKHATRAVSLRLKGNSEKGTICPNYPNCNGRLIRKYTEADLYKQLAYFSYILDTVRCMEKLEVHARVTLEKEMAKIRPIVELAASTIQSIRERSAYGWLQLQDFVVTV 679
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 28643132 28649634 - Lag0008719.1 Lac9g1232 620158
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1232 679 Coils Coil 263 283 - -
Lac9g1232 679 ProSitePatterns DNA polymerase family B signature. 237 245 IPR017964 GO:0000166(InterPro)|GO:0003676(InterPro)
Lac9g1232 679 Pfam DNA polymerase family B 36 421 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Lac9g1232 679 SUPERFAMILY Ribonuclease H-like 1 64 IPR012337 -
Lac9g1232 679 Gene3D Palm domain of DNA polymerase 111 299 IPR023211 -
Lac9g1232 679 SUPERFAMILY DNA/RNA polymerases 112 447 IPR043502 -
Lac9g1232 679 Gene3D - 1 92 IPR036397 GO:0003676(InterPro)
Lac9g1232 679 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 114 419 - GO:0003682(PANTHER)|GO:0003688(PANTHER)|GO:0003697(PANTHER)|GO:0003887(PANTHER)|GO:0005658(PANTHER)|GO:0006272(PANTHER)|GO:0006273(PANTHER)|GO:1902975(PANTHER)
Lac9g1232 679 PRINTS DNA-directed DNA-polymerase family B signature 182 194 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lac9g1232 679 PRINTS DNA-directed DNA-polymerase family B signature 235 243 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lac9g1232 679 Gene3D DNA Polymerase alpha, zinc finger 470 664 IPR038256 -
Lac9g1232 679 SMART polmehr3 1 249 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lac9g1232 679 Gene3D Helix hairpin bin 152 195 - -
Lac9g1232 679 FunFam DNA polymerase 147 196 - -
Lac9g1232 679 Gene3D - 419 461 IPR042087 -
Lac9g1232 679 Pfam DNA Polymerase alpha zinc finger 471 675 IPR015088 GO:0003887(InterPro)|GO:0006260(InterPro)
Lac9g1232 679 CDD POLBc_alpha 114 447 IPR045846 GO:0003887(InterPro)|GO:1902975(InterPro)
Lac9g1232 679 NCBIfam DNA polymerase (pol2) 5 419 - -
Lac9g1232 679 FunFam DNA polymerase 470 665 - -
Lac9g1232 679 Gene3D - 313 418 IPR042087 -
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1232 K02320 - csv:101211201 1202.19