Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac9g1241 ATGGAGTGGGTTCGAGGAGACGAACTGGGTCGTGGAAATTTTGCGACGATCAATTTAGCAAAGCTCACAAAGGGCTTCGATCAGTTTCCGCCATTAATGGCGGTGAAATCCTCTGTTTCTGTATCCTCTGTTTCGCTGAAGAACGAGAAGCACATTTTGGATCGAATTGGGAGTTGCCCACAAATCGTTACTTGTTTTGGCGATGGATTCAGTGTCGAAAGAGATGGGGAGAAGTATTATAATCTGTTCTTGGAGTACGCCAACGGCGGAAGCCTTGCGGATTCTGTGAAAATCCACGGCGGCGGGTTGCCGGAATTTGATGTTCGACGGTACACGAGGGCGATTCTTCGTGGGCTCCGGCATGTTCACGGAAACGGGTTTGTTCATTGCGATTTGAAGCTTTCGAATGTGTTGGTTTTTGGGAATGGTGAGGTTAAGATCGCTGATTTCGGGCTCGCGAGAGTGGCGACGGCGGCGAAAACAGAGGAAACGGAGGAGAAATTTGAGTGGAGGGGGACTCCGATGTATATGTCGCCGGAGACGGTGAACGGCGGGGAGTATGCGCCGCCGTGTGATGTTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGCCGGGAAGCCAGCGTGGAGGGTTCGGCCGGAAACGGATATATTTGGGTTGATGATGAGGATCGGAGTCGGCGACGAAGTGCCGGAGCTGCCGGAGAATTTATCGGCGGATGGGAAAGATTTTCTCCGGCAGTGTTTCGTTAAGGATCCGAGGAAGAGATGGACGGCGGAGATGCTTTTGAATCACCCATTCGTGGCCGGTGACGGTGACACTGTTACATTGAAGGAATCGGAACCGGCGACAGAGTCGCCGACGGGCCCTTTCGACTTCCCGGAATTTGTTTGTTCCGACCAAGGTTCTGATGAGTTGAATTTCTGTTGTTCTTATTCCTCGCCGGAGATAATGAGTAGACTACAGCGGCTGGTGACGGAGAAGCCTTTGGATTGGTCTGTTATGGAAAGTTGGGTCACAGTGAGGTGA 1032 52.33 MEWVRGDELGRGNFATINLAKLTKGFDQFPPLMAVKSSVSVSSVSLKNEKHILDRIGSCPQIVTCFGDGFSVERDGEKYYNLFLEYANGGSLADSVKIHGGGLPEFDVRRYTRAILRGLRHVHGNGFVHCDLKLSNVLVFGNGEVKIADFGLARVATAAKTEETEEKFEWRGTPMYMSPETVNGGEYAPPCDVWALGCAVVEMVAGKPAWRVRPETDIFGLMMRIGVGDEVPELPENLSADGKDFLRQCFVKDPRKRWTAEMLLNHPFVAGDGDTVTLKESEPATESPTGPFDFPEFVCSDQGSDELNFCCSYSSPEIMSRLQRLVTEKPLDWSVMESWVTVR 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 28812375 28813406 - Lag0008728.1 Lac9g1241 620167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac9g1241 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524(InterPro)
Lac9g1241 343 Pfam Protein kinase domain 5 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1241 343 Gene3D Transferase(Phosphotransferase) domain 1 2 296 - -
Lac9g1241 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Lac9g1241 343 CDD STKc_MAPKKK 2 269 - -
Lac9g1241 343 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Lac9g1241 343 SMART serkin_6 3 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1241 343 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac9g1241 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac4g2718 Lac-Chr4:46133313 Lac9g1241 Lac-Chr9:28812375 3.30E-56 dispersed
Lac4g2719 Lac-Chr4:46138385 Lac9g1241 Lac-Chr9:28812375 3.30E-56 dispersed
Lac7g2137 Lac-Chr7:35066030 Lac9g1241 Lac-Chr9:28812375 3.50E-53 dispersed
Lac9g1241 Lac-Chr9:28812375 Lac9g2041 Lac-Chr9:40031485 1.80E-54 dispersed
Lac1g2575 Lac-Chr1:47116554 Lac9g1241 Lac-Chr9:28812375 3.00E-116 transposed
Lac3g0784 Lac-Chr3:6262712 Lac9g1241 Lac-Chr9:28812375 4.50E-42 transposed
Lac1g1224 Lac-Chr1:31525425 Lac9g1241 Lac-Chr9:28812375 5.20E-17 wgd
Lac9g1241 Lac-Chr9:28812375 Lac9g1524 Lac-Chr9:33961408 4.40E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86423 PF00069 Pkinase 5.10E-51 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac9g1241 - - - 0.0